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The map label for this gene is bdlA [H]

Identifier: 66048228

GI number: 66048228

Start: 5934465

End: 5936483

Strand: Direct

Name: bdlA [H]

Synonym: Psyr_5004

Alternate gene names: 66048228

Gene position: 5934465-5936483 (Clockwise)

Preceding gene: 66048227

Following gene: 66048230

Centisome position: 97.39

GC content: 60.48

Gene sequence:

>2019_bases
ATGAGCCTTTTATCTCGTTTTCGGGCCGGCACGTCGCGGACCGAGGGCGCCATCAGTGTCATTACGTCCGCCCGAGAATT
GAACGCCAAGCTGTCTGCGCTGAGCTTCGATCCGGTCTATCTGACCGGTTTCGTTTCGCCGCACGTCGACTTCGATCAGG
TGGCCAAGTCTGTCGCTGCGCGCTTTCCCAACGCGAAGATCAGCCTGTGCACAACGTCAGGCGAACTGTGCTCGGGCAAT
GATTCGCTGTACTGCGCGGCGGATAACCAGTGGGACAGGATTGTCCTTGCGCTGTTCGACTCAAGCGTCATCAAGAGTGC
GGAGGTGTTACACATTCCGCTGCACAGCGAAGACATTCGCGGCGCGGGCAAGCGACTGTCGATGCGTGAGCGCATTGCGC
GCCTGACCGACTCGATCAAGCGCACGCAGATCAACACCCCCATCGACCACCGCGATACGCTGGCCTACGTCACGTTCGAC
GGGCTGTCGGCGTCGGAGTCGTTCTTCATGGAAGCGCTGTATGAGTCCGGGCGCTTTCCGTGCCTGTTCGTCGGCGGTTC
TGCGGGGGGCAAAGGCGACTTCAAGAAGACCTTGATTCACGACGGCAAACGCAGCTACGAAAATCATGCCCAGGTGGTGT
TTCTCAAGAGCGCAAAAAACGTGCGCTTCGGCGTCTTCAAGAGCCAGAACTTCGAGCCGACGCCACTGAGCCTGAGTGTG
CTGACGGCCTCCCTGGAGGAGCGTTACATCAGCCAGGTGGTCAACGCCAGAGGCGAGATCACCACGATGGTTGCGGCGCT
GTGTGAGGCGCTGAAGTGCGAGCGGCATGAGCTCGAAGGCAAGCTGGCGCAGTACTCGTTCGCCATCCGGGTGGGCGAAG
AGCTGTTCGTGCGCTCGATTGCGCGCATTGATTATGAAAGCGAACGGGTTCACCTGTTCTGCGACGTGGCGCCCGGCGAA
GAGCTGGTGATGGTCAAACGAACATCCATGATCGACACCACGCGCAAAGACTTCGCGCGCTTTCTGCAGGGCAAGTCCGG
AAAGCCGCTGCTCGGCCTGTTGAGCGACTGCATCCTGCGGCGCCTGAACAACGGCAGTGAACTGGGCCGGATGAATGACG
TGTTCGGTGCAACGCCGGTGGTGGGCTTTTCGACCTTTGGCGAGATTCTGGGGTTGAACCTCAACCAGACGCTCACTGCC
GTGTTCTTCTTCAAAGTGCCCGAAGGCCAGCCGTTCCGCGACGACTACATCGATAACTTCATCGCCTATTACGGCGAGTT
CAAGGCGTTCTTTCTGCGTCGGCAGATCAAGAAGCTGGCTGGTCTGAGCCATGTGGTGGTCAAGCAGATCGATCAGTTCA
AGCAGCGCAACTTCGTGCAAACCATTGACCCGAGCGGTCTGGACGAGCAGATCCGTCCGGTGTTCGGTGGCCTGAGCGAC
CTCGGCGATGTGCTGGTCAAGGCCCACCATGATCAGGAAGAAATCGCCGCTCAGTTGCGTCACTACTCTGGCGAGCTGCA
TGTGTCGATGGACGAGCTGTCGCAGACCATCACCCAGCAGGAAACGGTTATCGACAAAGCGGGCAGCACTGTCAAAAGCC
TGGTCAGTCAGGCTGACGAGGTGGTGCTGGGCTCGCGGGAGCTGGCCAAGTCCAGCCTGCGCATTCAGTCGGTGGTGCAG
ACGATCCAGCAGATCGCCGGACAGACCAACCTGCTGGCGCTGAACGCCGCCATCGAGGCTGCACGGGCGGGCGAAATGGG
ACGTGGCTTTGCCGTGGTGGCCGATGAAGTGCGCCAGCTGGCGCAGAAGACGTCGCAGAACGCCAACGACATCGGCACCG
ATATCGAGCGCCTGGCCGAAGAGATTCGCAAAGTGGCGCAGCACATCGAGGAGCAGTCCCTTGAGGTCGGAACGCTGACG
GGGCTGCTGTCGGAACTGGAAGGCTCCAGCGACATGACGGCGGGCACCTCGCAGCGTACCCGGCAACTGGCGGATACCCT
GCGCGGGCTGACTCAGTAG

Upstream 100 bases:

>100_bases
CATCGCCCTTCAAGCTCACCCCAACCTGTTGGCAGCCGATCAATAAGGATCGGTCCATATTCCGCGTGGCCTCTGCTTTT
TTATCTTTACGGGTTTAACC

Downstream 100 bases:

>100_bases
CAGCGCCTGCGTCAGGACGGCATATTGCCCGTCCTGACGCAGACCGAGTTACAGGCGGCTTACTGGTTACCCAGCACGCC
GACCTTGCCCATGACGTTGC

Product: chemotaxis sensory transducer

Products: NA

Alternate protein names: Chemotaxis regulator BdlA [H]

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MSLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAARFPNAKISLCTTSGELCSGN
DSLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIRGAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFD
GLSASESFFMEALYESGRFPCLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSV
LTASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSIARIDYESERVHLFCDVAPGE
ELVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILRRLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTA
VFFFKVPEGQPFRDDYIDNFIAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSD
LGDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADEVVLGSRELAKSSLRIQSVVQ
TIQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLT
GLLSELEGSSDMTAGTSQRTRQLADTLRGLTQ

Sequences:

>Translated_672_residues
MSLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAARFPNAKISLCTTSGELCSGN
DSLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIRGAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFD
GLSASESFFMEALYESGRFPCLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSV
LTASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSIARIDYESERVHLFCDVAPGE
ELVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILRRLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTA
VFFFKVPEGQPFRDDYIDNFIAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSD
LGDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADEVVLGSRELAKSSLRIQSVVQ
TIQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLT
GLLSELEGSSDMTAGTSQRTRQLADTLRGLTQ
>Mature_671_residues
SLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAARFPNAKISLCTTSGELCSGND
SLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIRGAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFDG
LSASESFFMEALYESGRFPCLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSVL
TASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSIARIDYESERVHLFCDVAPGEE
LVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILRRLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTAV
FFFKVPEGQPFRDDYIDNFIAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSDL
GDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADEVVLGSRELAKSSLRIQSVVQT
IQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLTG
LLSELEGSSDMTAGTSQRTRQLADTLRGLTQ

Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Integral Membrane. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=171, Percent_Identity=34.5029239766082, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI2367378, Length=119, Percent_Identity=45.3781512605042, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788195, Length=119, Percent_Identity=45.3781512605042, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788194, Length=126, Percent_Identity=43.6507936507937, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787690, Length=117, Percent_Identity=43.5897435897436, Blast_Score=76, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 74089; Mature: 73958

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAA
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHH
RFPNAKISLCTTSGELCSGNDSLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIR
HCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEHEEHHHHHHCCCCEEEECCCCHHHH
GAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFDGLSASESFFMEALYESGRFP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
CLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSV
EEEEECCCCCCCCHHHHHHHCCHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHH
LTASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARIDYESERVHLFCDVAPGEELVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILR
HHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTAVFFFKVPEGQPFRDDYIDNF
HCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCHHHHHHHH
IAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSD
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHH
LGDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADE
HHHHHHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VVLGSRELAKSSLRIQSVVQTIQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHH
AQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLTGLLSELEGSSDMTAGTSQRT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHH
RQLADTLRGLTQ
HHHHHHHHHCCC
>Mature Secondary Structure 
SLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAA
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHH
RFPNAKISLCTTSGELCSGNDSLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIR
HCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEHEEHHHHHHCCCCEEEECCCCHHHH
GAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFDGLSASESFFMEALYESGRFP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
CLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSV
EEEEECCCCCCCCHHHHHHHCCHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHH
LTASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARIDYESERVHLFCDVAPGEELVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILR
HHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTAVFFFKVPEGQPFRDDYIDNF
HCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCHHHHHHHH
IAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSD
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHH
LGDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADE
HHHHHHHCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VVLGSRELAKSSLRIQSVVQTIQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQL
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHH
AQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLTGLLSELEGSSDMTAGTSQRT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHH
RQLADTLRGLTQ
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]