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The map label for this gene is fdhD [H]

Identifier: 66048169

GI number: 66048169

Start: 5860140

End: 5860976

Strand: Direct

Name: fdhD [H]

Synonym: Psyr_4945

Alternate gene names: 66048169

Gene position: 5860140-5860976 (Clockwise)

Preceding gene: 66048168

Following gene: 66048170

Centisome position: 96.17

GC content: 63.2

Gene sequence:

>837_bases
ATGCCCGTTACGCGCAAGGTCAGCTCGGCGTCCTTTGCTACGCCAGCCCCTGAAGCAAGCCAGTCCTACAGCTACTCGAA
TCTCGAGGGCGTGGACGCTGCACGCAACGAACTTGCCGAAGAAGTGGCACTGGCGATTGCCTACAACGGTATCAGCCAGG
CGGTCATGCTGGTCAGCCCGACCGATCTGGAAGACTTTATCGTCGGTTTCAGTCTGGGCAGCGGCATCATTGCCTCGCAT
GACGAAATCTACGACTTCAAAATCAGCGGTTGCGGCTCGGCCATGCAGGCCGAGGTCGAGATCGCCAGCCGCGCGTTCTG
GGAACTCAAGCAGCAGCGTCGGCAACTGGCGGGCACCAGCGGTTGCGGGCTGTGTGGCGTTGAAGCCGTCGAGCAGGCAT
TGCCTGACCTGAAGGCGCTGCCCGGCGCGCCCCTGCCCCCGATCGAATGGCTGGAAGGCCTGCGTCAGCGCATCGGCGAG
TTCCAGCCGCTTGGCCGCCATTGCGGCGCTGTGCATGCGGCGGTGTTCATGGACGGTAATGGCCAGCTGTTGCTGGGCCG
TGAAGACATCGGCCGCCACAACGCGCTGGACAAACTGATCGGCGCCCTGATCCGCCAGGACATCCCCCTGGCCGGCGGCG
TCGCCATCGTGACCAGCCGCTGCAGCCTGGAACTGATTCAGAAAGTATTGCGCGCCGGCATCCAGACGCTGGTCAGCCTG
TCGTCGCCCACCGGCCTGGCCCTGCAATGGGCCCGTCGTCATAACCTCAATCTAATTCACCTGCCGCAGAAAAGTGCGCC
GCGGGTCTATAGCCCTGCGATGGAGATTCAAGCGTGA

Upstream 100 bases:

>100_bases
GTTGATCGACGTCATCTATCGGGGCATCAGCACTAGCGATTAGACGATTTCCAATAACGGGCCTAGTCTTGCAGATGTCA
TTCTGCCGGTATTTCAGCCC

Downstream 100 bases:

>100_bases
GCACTCATCATCAAGCCGACAAGACACCAACCCCCCGCTACAAGCCGTACAAAGGTGCGGCAGGCGGATGGGGCGCACTG
ATCAGCGTGACGCAACACTG

Product: formate dehydrogenase, subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPVTRKVSSASFATPAPEASQSYSYSNLEGVDAARNELAEEVALAIAYNGISQAVMLVSPTDLEDFIVGFSLGSGIIASH
DEIYDFKISGCGSAMQAEVEIASRAFWELKQQRRQLAGTSGCGLCGVEAVEQALPDLKALPGAPLPPIEWLEGLRQRIGE
FQPLGRHCGAVHAAVFMDGNGQLLLGREDIGRHNALDKLIGALIRQDIPLAGGVAIVTSRCSLELIQKVLRAGIQTLVSL
SSPTGLALQWARRHNLNLIHLPQKSAPRVYSPAMEIQA

Sequences:

>Translated_278_residues
MPVTRKVSSASFATPAPEASQSYSYSNLEGVDAARNELAEEVALAIAYNGISQAVMLVSPTDLEDFIVGFSLGSGIIASH
DEIYDFKISGCGSAMQAEVEIASRAFWELKQQRRQLAGTSGCGLCGVEAVEQALPDLKALPGAPLPPIEWLEGLRQRIGE
FQPLGRHCGAVHAAVFMDGNGQLLLGREDIGRHNALDKLIGALIRQDIPLAGGVAIVTSRCSLELIQKVLRAGIQTLVSL
SSPTGLALQWARRHNLNLIHLPQKSAPRVYSPAMEIQA
>Mature_277_residues
PVTRKVSSASFATPAPEASQSYSYSNLEGVDAARNELAEEVALAIAYNGISQAVMLVSPTDLEDFIVGFSLGSGIIASHD
EIYDFKISGCGSAMQAEVEIASRAFWELKQQRRQLAGTSGCGLCGVEAVEQALPDLKALPGAPLPPIEWLEGLRQRIGEF
QPLGRHCGAVHAAVFMDGNGQLLLGREDIGRHNALDKLIGALIRQDIPLAGGVAIVTSRCSLELIQKVLRAGIQTLVSLS
SPTGLALQWARRHNLNLIHLPQKSAPRVYSPAMEIQA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=236, Percent_Identity=39.4067796610169, Blast_Score=177, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 29717; Mature: 29586

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTRKVSSASFATPAPEASQSYSYSNLEGVDAARNELAEEVALAIAYNGISQAVMLVSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCEEEEECC
TDLEDFIVGFSLGSGIIASHDEIYDFKISGCGSAMQAEVEIASRAFWELKQQRRQLAGTS
CCHHHHHHHHHCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GCGLCGVEAVEQALPDLKALPGAPLPPIEWLEGLRQRIGEFQPLGRHCGAVHAAVFMDGN
CCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCC
GQLLLGREDIGRHNALDKLIGALIRQDIPLAGGVAIVTSRCSLELIQKVLRAGIQTLVSL
CEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SSPTGLALQWARRHNLNLIHLPQKSAPRVYSPAMEIQA
CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCHHCCC
>Mature Secondary Structure 
PVTRKVSSASFATPAPEASQSYSYSNLEGVDAARNELAEEVALAIAYNGISQAVMLVSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCEEEEECC
TDLEDFIVGFSLGSGIIASHDEIYDFKISGCGSAMQAEVEIASRAFWELKQQRRQLAGTS
CCHHHHHHHHHCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GCGLCGVEAVEQALPDLKALPGAPLPPIEWLEGLRQRIGEFQPLGRHCGAVHAAVFMDGN
CCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCC
GQLLLGREDIGRHNALDKLIGALIRQDIPLAGGVAIVTSRCSLELIQKVLRAGIQTLVSL
CEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
SSPTGLALQWARRHNLNLIHLPQKSAPRVYSPAMEIQA
CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]