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The map label for this gene is ydeP [H]

Identifier: 66048170

GI number: 66048170

Start: 5860973

End: 5863309

Strand: Direct

Name: ydeP [H]

Synonym: Psyr_4946

Alternate gene names: 66048170

Gene position: 5860973-5863309 (Clockwise)

Preceding gene: 66048169

Following gene: 66048171

Centisome position: 96.18

GC content: 62.3

Gene sequence:

>2337_bases
GTGAGCACTCATCATCAAGCCGACAAGACACCAACCCCCCGCTACAAGCCGTACAAAGGTGCGGCAGGCGGATGGGGCGC
ACTGATCAGCGTGACGCAACACTGGCTGGGCAGTGACAACGCGCTGAAGAACCTGCGCATGATGCTCAAGACCAACCAGA
ACGGCGGTTTCGACTGCCCGGGCTGCGCGTGGGGCGACTCGCCGGAAAGCGGCATGGTCAAGTTCTGCGAAAACGGCGCC
AAGGCGGTGAACTGGGAAGCGACCAAGCGTCGTGTGGACCCGGCCTTCTTCGCCCGCTACAGCGTCAGCTCGCTGATGGA
GCAGAGCGATTACTGGCTCGAGTATCAGGGCCGTCTGACCGAGCCGATGAGCTATGACGCGGAAACCGACCGTTACAAGC
CGATCAGTTGGGACAGCGCGTTTGCGCTGATCGCCAAGCACCTGAAGAACCTGCCCAGCCCGAACATGGCCGAGTTCTAC
ACCTCGGGTCGCGCCAGCAACGAAGCGGCATACCTGTATCAGCTGTTCGTGCGCGCCTACGGCACCAACAACTTCCCGGA
CTGCTCGAACATGTGCCACGAGGCCAGTGGCGTAGCGCTGTCGCAAAGCGTCGGCGTGGGCAAGGGCACCGTGACCTTCG
AGGATTTCGAACACGCCGATGCCATCTTCGTCCTCGGTCAGAACCCCGGCACCAACCACCCGCGCATGCTCGAACCACTG
CGTGAAGCGGTACAGCGCGGCGCCCAGGTGGTTTGCGTCAACCCGCTCAAAGAGCGTGGCCTGGAGCGTTTCCAGCACCC
GCAACACCCGGTCGAGATGCTCACCAACGGCGACCGCCCGACCAACACCGCCTACTTCCGCCCTGCCCTGGGTGGCGACA
TGGCGCTGTTGCGCGGCATGGCCAAGTTCCTGCTGCAATGGGAGCGCGAGGCGCAGGCCAACAACGCCCCTTCGGTGTTC
GATCATGCGTTCCTCAACGAACACACCGAAGGCGTACTCGAATACCTGGCCGCCATCGATGACACGTCCTGGGACGCCAT
CGTTGAGCAATCCGGCCTGCCGCTGAGCGACATCGAACAATCGGCACGCATGTACGCCAAGGGCAAGAACGTGATCATGT
GCTGGGCGATGGGTATCACCCAGCACCGTCACTCGGTGCCGACCATCCAGGAAATTGCCAACCTGATGCTGCTGCGCGGC
AACATCGGTCGTCCGGGTGCCGGTCTGTGCCCGGTGCGCGGTCACAGTAACGTGCAGGGCGACCGCACCATGGGCATCAA
CGAACGCCCACCGGTGTTCCTGCTCGATGCGCTGGAAAAACGCTTCCAGTTCAAAGTGCCCCGCGAAAACGGCCACAACG
TCGTCGAAGCCATTCACGCCATGGCCGAAGGCCGCGCCAAGGTGTTCATTGCGCTGGGCGGCAACTTCGCTCAGGCCACC
CCGGACAGCCATCGCACTGCCGAAGCGCTCAGCAAATGCGATCTGACCGTACAGATCAGCACCAAGCTGAACCGCAGCCA
CCTGTTCCACGGCAAGGACGCGCTGATCCTGCCGTGCTTCGGCCGTACCGACATCGATATCCAGGCCAACGGCCCACAAG
CCGTCACCGTGGAAGATTCGTTCAGCATGGTTCACGCTTCCAACGGTCAGTTGAAGCCGTCGTCGAAGCAAATGCGTTCC
GAGCCTGCGATCATCGCCGGTATCGCCAACGCAACGCTGGGCAAGACGCCTGTCGACTGGCTGTGGCTGGTCGAGGACTA
CAACCGTATTCGTGACCTGATCGCCGACACCATCCCCGGCTTCAAGGATTTCAACGAGCGCGTCAAGCACCCGGGCGGCT
TCTACCTGGGTAACGCTGCTGGCGCACGCCGCTGGAACACTGCGTCGACCCGCGCCAACTTCAAGTCCAACGCGCTGCCG
TTGACTCTGATCAATGAACACGTCAGCTCGACCGGGCAGATCCCGGACCTGATCATGCAGTCGATGCGCTCGCACGATCA
GTACAACACCACCATCTATGGCCTGGACGACCGTTATCGCGGCGTCAAAGGTCAGCGTGACGTGCTGTTCGTCAACGAAG
CCGACATCATCCGCCTGGGCTTCCAGCCGGGGCAGAAGGCGGACCTGATTTCGATCTGGAGTGATAACCGCGAGCGCCGC
GTCAAAGGCTTCACGTTGTTGCCGTTCGATATTCCGGCCGGTCAGGCTGCCGCCTACTACCCGGAGGTCAACCCGCTGGT
GCCGCTGGAAAGCGTGGGCGATGGCAGCAGCACGCCGACATCGAAGTTCGTTGCCATCCGCCTCGAGCGCTCGGCAGAGT
CGGCACGCATCCTCTGA

Upstream 100 bases:

>100_bases
GCCTGGCCCTGCAATGGGCCCGTCGTCATAACCTCAATCTAATTCACCTGCCGCAGAAAAGTGCGCCGCGGGTCTATAGC
CCTGCGATGGAGATTCAAGC

Downstream 100 bases:

>100_bases
CGTCCCTGAAAGACGCCCACAAAAAAGGCCCGTTTCACTGGAAACGGGCCTTTTGCAAGTAACCTCAGACTCTCTTTTCA
GACTTAAGTTCCTTAGCCAA

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MSTHHQADKTPTPRYKPYKGAAGGWGALISVTQHWLGSDNALKNLRMMLKTNQNGGFDCPGCAWGDSPESGMVKFCENGA
KAVNWEATKRRVDPAFFARYSVSSLMEQSDYWLEYQGRLTEPMSYDAETDRYKPISWDSAFALIAKHLKNLPSPNMAEFY
TSGRASNEAAYLYQLFVRAYGTNNFPDCSNMCHEASGVALSQSVGVGKGTVTFEDFEHADAIFVLGQNPGTNHPRMLEPL
REAVQRGAQVVCVNPLKERGLERFQHPQHPVEMLTNGDRPTNTAYFRPALGGDMALLRGMAKFLLQWEREAQANNAPSVF
DHAFLNEHTEGVLEYLAAIDDTSWDAIVEQSGLPLSDIEQSARMYAKGKNVIMCWAMGITQHRHSVPTIQEIANLMLLRG
NIGRPGAGLCPVRGHSNVQGDRTMGINERPPVFLLDALEKRFQFKVPRENGHNVVEAIHAMAEGRAKVFIALGGNFAQAT
PDSHRTAEALSKCDLTVQISTKLNRSHLFHGKDALILPCFGRTDIDIQANGPQAVTVEDSFSMVHASNGQLKPSSKQMRS
EPAIIAGIANATLGKTPVDWLWLVEDYNRIRDLIADTIPGFKDFNERVKHPGGFYLGNAAGARRWNTASTRANFKSNALP
LTLINEHVSSTGQIPDLIMQSMRSHDQYNTTIYGLDDRYRGVKGQRDVLFVNEADIIRLGFQPGQKADLISIWSDNRERR
VKGFTLLPFDIPAGQAAAYYPEVNPLVPLESVGDGSSTPTSKFVAIRLERSAESARIL

Sequences:

>Translated_778_residues
MSTHHQADKTPTPRYKPYKGAAGGWGALISVTQHWLGSDNALKNLRMMLKTNQNGGFDCPGCAWGDSPESGMVKFCENGA
KAVNWEATKRRVDPAFFARYSVSSLMEQSDYWLEYQGRLTEPMSYDAETDRYKPISWDSAFALIAKHLKNLPSPNMAEFY
TSGRASNEAAYLYQLFVRAYGTNNFPDCSNMCHEASGVALSQSVGVGKGTVTFEDFEHADAIFVLGQNPGTNHPRMLEPL
REAVQRGAQVVCVNPLKERGLERFQHPQHPVEMLTNGDRPTNTAYFRPALGGDMALLRGMAKFLLQWEREAQANNAPSVF
DHAFLNEHTEGVLEYLAAIDDTSWDAIVEQSGLPLSDIEQSARMYAKGKNVIMCWAMGITQHRHSVPTIQEIANLMLLRG
NIGRPGAGLCPVRGHSNVQGDRTMGINERPPVFLLDALEKRFQFKVPRENGHNVVEAIHAMAEGRAKVFIALGGNFAQAT
PDSHRTAEALSKCDLTVQISTKLNRSHLFHGKDALILPCFGRTDIDIQANGPQAVTVEDSFSMVHASNGQLKPSSKQMRS
EPAIIAGIANATLGKTPVDWLWLVEDYNRIRDLIADTIPGFKDFNERVKHPGGFYLGNAAGARRWNTASTRANFKSNALP
LTLINEHVSSTGQIPDLIMQSMRSHDQYNTTIYGLDDRYRGVKGQRDVLFVNEADIIRLGFQPGQKADLISIWSDNRERR
VKGFTLLPFDIPAGQAAAYYPEVNPLVPLESVGDGSSTPTSKFVAIRLERSAESARIL
>Mature_777_residues
STHHQADKTPTPRYKPYKGAAGGWGALISVTQHWLGSDNALKNLRMMLKTNQNGGFDCPGCAWGDSPESGMVKFCENGAK
AVNWEATKRRVDPAFFARYSVSSLMEQSDYWLEYQGRLTEPMSYDAETDRYKPISWDSAFALIAKHLKNLPSPNMAEFYT
SGRASNEAAYLYQLFVRAYGTNNFPDCSNMCHEASGVALSQSVGVGKGTVTFEDFEHADAIFVLGQNPGTNHPRMLEPLR
EAVQRGAQVVCVNPLKERGLERFQHPQHPVEMLTNGDRPTNTAYFRPALGGDMALLRGMAKFLLQWEREAQANNAPSVFD
HAFLNEHTEGVLEYLAAIDDTSWDAIVEQSGLPLSDIEQSARMYAKGKNVIMCWAMGITQHRHSVPTIQEIANLMLLRGN
IGRPGAGLCPVRGHSNVQGDRTMGINERPPVFLLDALEKRFQFKVPRENGHNVVEAIHAMAEGRAKVFIALGGNFAQATP
DSHRTAEALSKCDLTVQISTKLNRSHLFHGKDALILPCFGRTDIDIQANGPQAVTVEDSFSMVHASNGQLKPSSKQMRSE
PAIIAGIANATLGKTPVDWLWLVEDYNRIRDLIADTIPGFKDFNERVKHPGGFYLGNAAGARRWNTASTRANFKSNALPL
TLINEHVSSTGQIPDLIMQSMRSHDQYNTTIYGLDDRYRGVKGQRDVLFVNEADIIRLGFQPGQKADLISIWSDNRERRV
KGFTLLPFDIPAGQAAAYYPEVNPLVPLESVGDGSSTPTSKFVAIRLERSAESARIL

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=770, Percent_Identity=47.5324675324675, Blast_Score=745, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=394, Percent_Identity=27.6649746192893, Blast_Score=162, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 86128; Mature: 85997

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHHQADKTPTPRYKPYKGAAGGWGALISVTQHWLGSDNALKNLRMMLKTNQNGGFDCP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCC
GCAWGDSPESGMVKFCENGAKAVNWEATKRRVDPAFFARYSVSSLMEQSDYWLEYQGRLT
CCCCCCCCCCHHHHHHCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCC
EPMSYDAETDRYKPISWDSAFALIAKHLKNLPSPNMAEFYTSGRASNEAAYLYQLFVRAY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
GTNNFPDCSNMCHEASGVALSQSVGVGKGTVTFEDFEHADAIFVLGQNPGTNHPRMLEPL
CCCCCCCHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHH
REAVQRGAQVVCVNPLKERGLERFQHPQHPVEMLTNGDRPTNTAYFRPALGGDMALLRGM
HHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHH
AKFLLQWEREAQANNAPSVFDHAFLNEHTEGVLEYLAAIDDTSWDAIVEQSGLPLSDIEQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHH
SARMYAKGKNVIMCWAMGITQHRHSVPTIQEIANLMLLRGNIGRPGAGLCPVRGHSNVQG
HHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC
DRTMGINERPPVFLLDALEKRFQFKVPRENGHNVVEAIHAMAEGRAKVFIALGGNFAQAT
CCEECCCCCCCEEEHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PDSHRTAEALSKCDLTVQISTKLNRSHLFHGKDALILPCFGRTDIDIQANGPQAVTVEDS
CCCHHHHHHHHHCCEEEEEECCCCCHHEECCCCEEEEEECCCCCEEEECCCCEEEEEECC
FSMVHASNGQLKPSSKQMRSEPAIIAGIANATLGKTPVDWLWLVEDYNRIRDLIADTIPG
CEEEECCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
FKDFNERVKHPGGFYLGNAAGARRWNTASTRANFKSNALPLTLINEHVSSTGQIPDLIMQ
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHHHHHH
SMRSHDQYNTTIYGLDDRYRGVKGQRDVLFVNEADIIRLGFQPGQKADLISIWSDNRERR
HHHCCCCCCCEEEECCHHHCCCCCCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCCE
VKGFTLLPFDIPAGQAAAYYPEVNPLVPLESVGDGSSTPTSKFVAIRLERSAESARIL
ECCEEEEEEECCCCCCEEECCCCCCCCCHHCCCCCCCCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
STHHQADKTPTPRYKPYKGAAGGWGALISVTQHWLGSDNALKNLRMMLKTNQNGGFDCP
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCC
GCAWGDSPESGMVKFCENGAKAVNWEATKRRVDPAFFARYSVSSLMEQSDYWLEYQGRLT
CCCCCCCCCCHHHHHHCCCCCEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCC
EPMSYDAETDRYKPISWDSAFALIAKHLKNLPSPNMAEFYTSGRASNEAAYLYQLFVRAY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
GTNNFPDCSNMCHEASGVALSQSVGVGKGTVTFEDFEHADAIFVLGQNPGTNHPRMLEPL
CCCCCCCHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHH
REAVQRGAQVVCVNPLKERGLERFQHPQHPVEMLTNGDRPTNTAYFRPALGGDMALLRGM
HHHHHCCCEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHH
AKFLLQWEREAQANNAPSVFDHAFLNEHTEGVLEYLAAIDDTSWDAIVEQSGLPLSDIEQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHH
SARMYAKGKNVIMCWAMGITQHRHSVPTIQEIANLMLLRGNIGRPGAGLCPVRGHSNVQG
HHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC
DRTMGINERPPVFLLDALEKRFQFKVPRENGHNVVEAIHAMAEGRAKVFIALGGNFAQAT
CCEECCCCCCCEEEHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PDSHRTAEALSKCDLTVQISTKLNRSHLFHGKDALILPCFGRTDIDIQANGPQAVTVEDS
CCCHHHHHHHHHCCEEEEEECCCCCHHEECCCCEEEEEECCCCCEEEECCCCEEEEEECC
FSMVHASNGQLKPSSKQMRSEPAIIAGIANATLGKTPVDWLWLVEDYNRIRDLIADTIPG
CEEEECCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
FKDFNERVKHPGGFYLGNAAGARRWNTASTRANFKSNALPLTLINEHVSSTGQIPDLIMQ
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHHHHHH
SMRSHDQYNTTIYGLDDRYRGVKGQRDVLFVNEADIIRLGFQPGQKADLISIWSDNRERR
HHHCCCCCCCEEEECCHHHCCCCCCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCCE
VKGFTLLPFDIPAGQAAAYYPEVNPLVPLESVGDGSSTPTSKFVAIRLERSAESARIL
ECCEEEEEEECCCCCCEEECCCCCCCCCHHCCCCCCCCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]