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The map label for this gene is ugpB [C]

Identifier: 66048036

GI number: 66048036

Start: 5707179

End: 5708495

Strand: Direct

Name: ugpB [C]

Synonym: Psyr_4812

Alternate gene names: 66048036

Gene position: 5707179-5708495 (Clockwise)

Preceding gene: 66048034

Following gene: 66048037

Centisome position: 93.66

GC content: 59.91

Gene sequence:

>1317_bases
ATGAACATTCGGAAAACGCTTTTCCTGTCCGCAGGCGTGTCCGCCGCCCTTTTCAACCTGACCGTCCAGGCTGCCGAAAC
CGTGACCATCGCCACGGTGAACAACGGCGACATGATCCGCATGCAGCGCCTGTCGAAAACCTTTGAACAGCAGCATCCCG
ACATCAAACTCAACTGGGTGGTGCTCGAAGAAAACGTCCTGCGCCAACGCCTGACCACCGATATCGCCACACAGGGTGGC
CAGTTCGACGTATTGACCATCGGCACCTACGAGACCCCGTTATGGGGCGCCAAACAGTGGCTGGAGCCGATCACCGGCCT
TGCGCCGGACTACGATCTGGAGGATATCTTTCCCTCGGTGCGCCAAGGCTTGTCAGTCAAGGACACGCTCTATGCCCTGC
CCTTTTACGGCGAAAGCACCATTACTTATTACCGCACCGATTTGTTCAAGCAGGCAGGCTTGAGCATGCCCGAGCACCCG
ACCTGGACGCAGCTGGGCGAATTTGCCGCAAAGCTGCATAAACCCGACAAGGGCGTTTACGGCATGTGCCTGCGCGGCAA
GGCCGGTTGGGGTGAGAACATCGCCTTGCTCAGCACCATGGCCAATGCATTCGGCGCGCGCTGGTTCGATGAGCAGTGGA
AACCTGAATTGACCAGCCCGGAATGGAGCAAGGCGGCGAATTTCTACGTCAACACTCTGAAAAACTATGGCCCGCCGGGC
GTATCGAGCAACGGTTTCAACGAAACACTCGCGCTGTTCAACAGCGGCAAATGCGCGTTGTGGGTGGATGCCAGCGTGGC
CGGCTCGTTCACCACCGACAAGGCGCAGAGCAATGTTGTCGACAGCGTCGGCTTTGCACCTGCGCCGGTCGAAGTGACGG
ACAAGGGCTCGTCATGGCTCTACGCCTGGTCGCTGGCAATACCGACTACCTCGAAGCACAAGGATACAGCCAAGGCGTTC
ATCACCTGGGCGACGTCCAAGGCGTATATCCAGCTGGTCGCCGAGACAGACGGCATCAGCAACGTGCCACCTGGCACCCG
CGCCTCCACCTACAGCGAGGCTTATCTGAAAGCGGCGCCGTTCGCCAAGGTCACGCTGCAGATGATGCAACACGCCGACC
CGGCGCACCCGTCGGCCAAGCCCGTGCCCTATGTCGGTATCCAGTACGTGACCATTCCCGAGTTTCAGGCCATCGGCACC
TCGGTCGGCAAGCTGTTTTCTGCCGCTGTAACCGGGCAAACCACCACTGAACAGGCGCTCACAGCCGCGCAGGCGGTGAC
CGAACGCGAGATGAAACGTGCCGGCTACCCGAAGTAG

Upstream 100 bases:

>100_bases
GGGCTGCTGTAATCGAGCCGTCCACCAGGGTGACTCAACCGTGGCCAACAACAAAAACAATGACTCCCGCCAGACAAGGC
GCGGGGTGGAGAGCACTACG

Downstream 100 bases:

>100_bases
AGCGCCAGCCCTCAACTGTATTGAACGGATGATGAACCCATGAAACGACTTGAAGGTAAAAGCGCGCTGATCACCGGATC
GGCGCGAGGCATCGGCCGGG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MNIRKTLFLSAGVSAALFNLTVQAAETVTIATVNNGDMIRMQRLSKTFEQQHPDIKLNWVVLEENVLRQRLTTDIATQGG
QFDVLTIGTYETPLWGAKQWLEPITGLAPDYDLEDIFPSVRQGLSVKDTLYALPFYGESTITYYRTDLFKQAGLSMPEHP
TWTQLGEFAAKLHKPDKGVYGMCLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWSKAANFYVNTLKNYGPPG
VSSNGFNETLALFNSGKCALWVDASVAGSFTTDKAQSNVVDSVGFAPAPVEVTDKGSSWLYAWSLAIPTTSKHKDTAKAF
ITWATSKAYIQLVAETDGISNVPPGTRASTYSEAYLKAAPFAKVTLQMMQHADPAHPSAKPVPYVGIQYVTIPEFQAIGT
SVGKLFSAAVTGQTTTEQALTAAQAVTEREMKRAGYPK

Sequences:

>Translated_438_residues
MNIRKTLFLSAGVSAALFNLTVQAAETVTIATVNNGDMIRMQRLSKTFEQQHPDIKLNWVVLEENVLRQRLTTDIATQGG
QFDVLTIGTYETPLWGAKQWLEPITGLAPDYDLEDIFPSVRQGLSVKDTLYALPFYGESTITYYRTDLFKQAGLSMPEHP
TWTQLGEFAAKLHKPDKGVYGMCLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWSKAANFYVNTLKNYGPPG
VSSNGFNETLALFNSGKCALWVDASVAGSFTTDKAQSNVVDSVGFAPAPVEVTDKGSSWLYAWSLAIPTTSKHKDTAKAF
ITWATSKAYIQLVAETDGISNVPPGTRASTYSEAYLKAAPFAKVTLQMMQHADPAHPSAKPVPYVGIQYVTIPEFQAIGT
SVGKLFSAAVTGQTTTEQALTAAQAVTEREMKRAGYPK
>Mature_438_residues
MNIRKTLFLSAGVSAALFNLTVQAAETVTIATVNNGDMIRMQRLSKTFEQQHPDIKLNWVVLEENVLRQRLTTDIATQGG
QFDVLTIGTYETPLWGAKQWLEPITGLAPDYDLEDIFPSVRQGLSVKDTLYALPFYGESTITYYRTDLFKQAGLSMPEHP
TWTQLGEFAAKLHKPDKGVYGMCLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWSKAANFYVNTLKNYGPPG
VSSNGFNETLALFNSGKCALWVDASVAGSFTTDKAQSNVVDSVGFAPAPVEVTDKGSSWLYAWSLAIPTTSKHKDTAKAF
ITWATSKAYIQLVAETDGISNVPPGTRASTYSEAYLKAAPFAKVTLQMMQHADPAHPSAKPVPYVGIQYVTIPEFQAIGT
SVGKLFSAAVTGQTTTEQALTAAQAVTEREMKRAGYPK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47914; Mature: 47914

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRKTLFLSAGVSAALFNLTVQAAETVTIATVNNGDMIRMQRLSKTFEQQHPDIKLNWV
CCCCCEEEECCCCHHHHHHEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
VLEENVLRQRLTTDIATQGGQFDVLTIGTYETPLWGAKQWLEPITGLAPDYDLEDIFPSV
EECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
RQGLSVKDTLYALPFYGESTITYYRTDLFKQAGLSMPEHPTWTQLGEFAAKLHKPDKGVY
HCCCCCCHHEEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCE
GMCLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWSKAANFYVNTLKNYGPPG
EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
VSSNGFNETLALFNSGKCALWVDASVAGSFTTDKAQSNVVDSVGFAPAPVEVTDKGSSWL
CCCCCCCHHHHEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCEE
YAWSLAIPTTSKHKDTAKAFITWATSKAYIQLVAETDGISNVPPGTRASTYSEAYLKAAP
EEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCC
FAKVTLQMMQHADPAHPSAKPVPYVGIQYVTIPEFQAIGTSVGKLFSAAVTGQTTTEQAL
HHHHHHHHHHCCCCCCCCCCCCCEECEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
TAAQAVTEREMKRAGYPK
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNIRKTLFLSAGVSAALFNLTVQAAETVTIATVNNGDMIRMQRLSKTFEQQHPDIKLNWV
CCCCCEEEECCCCHHHHHHEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
VLEENVLRQRLTTDIATQGGQFDVLTIGTYETPLWGAKQWLEPITGLAPDYDLEDIFPSV
EECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
RQGLSVKDTLYALPFYGESTITYYRTDLFKQAGLSMPEHPTWTQLGEFAAKLHKPDKGVY
HCCCCCCHHEEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCE
GMCLRGKAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWSKAANFYVNTLKNYGPPG
EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
VSSNGFNETLALFNSGKCALWVDASVAGSFTTDKAQSNVVDSVGFAPAPVEVTDKGSSWL
CCCCCCCHHHHEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCEE
YAWSLAIPTTSKHKDTAKAFITWATSKAYIQLVAETDGISNVPPGTRASTYSEAYLKAAP
EEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCC
FAKVTLQMMQHADPAHPSAKPVPYVGIQYVTIPEFQAIGTSVGKLFSAAVTGQTTTEQAL
HHHHHHHHHHCCCCCCCCCCCCCEECEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHH
TAAQAVTEREMKRAGYPK
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]