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The map label for this gene is ybbN [H]

Identifier: 66047693

GI number: 66047693

Start: 5327920

End: 5328792

Strand: Direct

Name: ybbN [H]

Synonym: Psyr_4466

Alternate gene names: 66047693

Gene position: 5327920-5328792 (Clockwise)

Preceding gene: 66047692

Following gene: 66047696

Centisome position: 87.43

GC content: 62.2

Gene sequence:

>873_bases
ATGAGCCAGGAAACTGCTTACATCTTCGACGCAACCGCCGCGAACTTCGATCAACTGGTGATCGACAAGTCCTTCGACCA
GCCGGTGCTGGTGGATTTCTGGGCCGAGTGGTGTGCGCCCTGCAAGGTCTTGATGCCCCTGCTGCAGCAAATCACCGAGA
GTTATCAGGGCGAGCTGCTGCTGGCCAAGGTCAATTGCGACATCGAGCAGGACATCGTGGCGCGCTTCGGCATTCGCAGC
CTGCCGACCGTGGTGCTGTTCAAGGACGGCCAGCCGGTGGATGGCTTTGCCGGTGCCCAGCCGGAGTCGGAAATCCGCAA
GATTCTCGACCAGCATGTGGTCATGCCGCCACCGCCAGCCGCCGATCCGCTCAAGCAGGCACAGGCGCTGTTTGCGGAAA
GTCGTTTCGCCGAGGCCGAAGCACAGCTCAAGGTGCTGCTGGGCGAAGACAACACCAATGGCGCCGCGCTGATTCTGTAT
GCGCGCTGCCTGGCAGAACGTGGCGAACTGAGCGAGGCCAAGGCTGTGCTGGATGCGGTCACCGGTGATGCGCACAAGGC
CGAACTCGCCGGCGCCAAGGCCCAGCTGACGTTCCTCGCGCAAGCCGCGACCCTGCCGGACGCTGCCGAACTGAAAAGCC
GCCTTGCACAAAACCCGCAGGACGATGAAGCAGCACTGCAACTGGCGATTCAGCAGTTGTCGCGTCAGCAGTACGAAGCG
GCGCTCGATGGCCTGCTCAAGCTGTTCATCCGCAATCGCAATTACGCTGAGGGCCTGCCGCACAAGACGCTGCTGCAGGT
ATTCGACCTGCTGGGCAACGAGCACCCGCTGGTCACGGCCTACCGCCGCAAACTGTTTGCCGCGCTGTACTAA

Upstream 100 bases:

>100_bases
CAATGAGTGTGGGCACGATCATGTCCAATAGACGACACCGCTTTCAGCATTGCCCTGCGGGCTTTATAGTTGGCGGCATT
CAGATTCTTCGAGACGTGCA

Downstream 100 bases:

>100_bases
TGTACAAAGCAACAGGCACCGCTCGGGTGCCTGTTGTTGTTGAAAGCCGTCAGGTCACGTCGCTTCGACCCAGCTGTACA
GCGGCGCATCCCCGCCGCTC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSQETAYIFDATAANFDQLVIDKSFDQPVLVDFWAEWCAPCKVLMPLLQQITESYQGELLLAKVNCDIEQDIVARFGIRS
LPTVVLFKDGQPVDGFAGAQPESEIRKILDQHVVMPPPPAADPLKQAQALFAESRFAEAEAQLKVLLGEDNTNGAALILY
ARCLAERGELSEAKAVLDAVTGDAHKAELAGAKAQLTFLAQAATLPDAAELKSRLAQNPQDDEAALQLAIQQLSRQQYEA
ALDGLLKLFIRNRNYAEGLPHKTLLQVFDLLGNEHPLVTAYRRKLFAALY

Sequences:

>Translated_290_residues
MSQETAYIFDATAANFDQLVIDKSFDQPVLVDFWAEWCAPCKVLMPLLQQITESYQGELLLAKVNCDIEQDIVARFGIRS
LPTVVLFKDGQPVDGFAGAQPESEIRKILDQHVVMPPPPAADPLKQAQALFAESRFAEAEAQLKVLLGEDNTNGAALILY
ARCLAERGELSEAKAVLDAVTGDAHKAELAGAKAQLTFLAQAATLPDAAELKSRLAQNPQDDEAALQLAIQQLSRQQYEA
ALDGLLKLFIRNRNYAEGLPHKTLLQVFDLLGNEHPLVTAYRRKLFAALY
>Mature_289_residues
SQETAYIFDATAANFDQLVIDKSFDQPVLVDFWAEWCAPCKVLMPLLQQITESYQGELLLAKVNCDIEQDIVARFGIRSL
PTVVLFKDGQPVDGFAGAQPESEIRKILDQHVVMPPPPAADPLKQAQALFAESRFAEAEAQLKVLLGEDNTNGAALILYA
RCLAERGELSEAKAVLDAVTGDAHKAELAGAKAQLTFLAQAATLPDAAELKSRLAQNPQDDEAALQLAIQQLSRQQYEAA
LDGLLKLFIRNRNYAEGLPHKTLLQVFDLLGNEHPLVTAYRRKLFAALY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=86, Percent_Identity=36.046511627907, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI50592994, Length=85, Percent_Identity=37.6470588235294, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI5031973, Length=118, Percent_Identity=33.0508474576271, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081747, Length=285, Percent_Identity=37.1929824561403, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=38.4615384615385, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082331, Length=106, Percent_Identity=39.622641509434, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=94, Percent_Identity=42.5531914893617, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17507705, Length=110, Percent_Identity=35.4545454545455, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71980565, Length=103, Percent_Identity=29.126213592233, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71980562, Length=100, Percent_Identity=29, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323072, Length=91, Percent_Identity=35.1648351648352, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6321648, Length=78, Percent_Identity=34.6153846153846, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573567, Length=112, Percent_Identity=37.5, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24639826, Length=97, Percent_Identity=32.9896907216495, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24639068, Length=95, Percent_Identity=37.8947368421053, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24664269, Length=106, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17647799, Length=116, Percent_Identity=35.3448275862069, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17648013, Length=72, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583090, Length=72, Percent_Identity=38.8888888888889, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31874; Mature: 31743

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQETAYIFDATAANFDQLVIDKSFDQPVLVDFWAEWCAPCKVLMPLLQQITESYQGELL
CCCCCEEEEECCCCCHHHHHEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEE
LAKVNCDIEQDIVARFGIRSLPTVVLFKDGQPVDGFAGAQPESEIRKILDQHVVMPPPPA
EEEECCCHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
ADPLKQAQALFAESRFAEAEAQLKVLLGEDNTNGAALILYARCLAERGELSEAKAVLDAV
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
TGDAHKAELAGAKAQLTFLAQAATLPDAAELKSRLAQNPQDDEAALQLAIQQLSRQQYEA
CCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALDGLLKLFIRNRNYAEGLPHKTLLQVFDLLGNEHPLVTAYRRKLFAALY
HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQETAYIFDATAANFDQLVIDKSFDQPVLVDFWAEWCAPCKVLMPLLQQITESYQGELL
CCCCEEEEECCCCCHHHHHEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEE
LAKVNCDIEQDIVARFGIRSLPTVVLFKDGQPVDGFAGAQPESEIRKILDQHVVMPPPPA
EEEECCCHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
ADPLKQAQALFAESRFAEAEAQLKVLLGEDNTNGAALILYARCLAERGELSEAKAVLDAV
CCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
TGDAHKAELAGAKAQLTFLAQAATLPDAAELKSRLAQNPQDDEAALQLAIQQLSRQQYEA
CCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALDGLLKLFIRNRNYAEGLPHKTLLQVFDLLGNEHPLVTAYRRKLFAALY
HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]