| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is pbpC [H]
Identifier: 66047614
GI number: 66047614
Start: 5248303
End: 5250651
Strand: Direct
Name: pbpC [H]
Synonym: Psyr_4387
Alternate gene names: 66047614
Gene position: 5248303-5250651 (Clockwise)
Preceding gene: 66047612
Following gene: 66047617
Centisome position: 86.13
GC content: 65.69
Gene sequence:
>2349_bases TTGAAACCTGAATTTCTTCTGCGCCTGCCGCGAACGTTCAAGTGGCTGGCGGGCGCGATCATGCTGCTGATCGCCCTCCT CTGGCTGGCTGACCGACTCTGGCCGCTGCCACTGCCCAGGGACGATCTGGCTCGCGTTGTGCTGGCCGAGGACGGTACAC CACTGTGGCGCTTCGCCGATACCAATGGCGTATGGCGCTATCCGGTCAGCAACGCGCAGGTCTCGCCCTACTACCTCGAA GCCCTGCTGACCTACGAAGACCGCTGGTTCTACAGCCATCCCGGGGTCAACCCGCTGGCGCTGTTGCGCGCCACCTGGCA AAACCTCAGCGGTGCCCGTGTAGTCTCAGGCGGCAGCACACTGTCGATGCAAGTGGCGCGGTTGCTCGATCCGCATTCAC GTACGTTATCCGGCAAGTTTCGCCAGCTGTGGCGCACGCTGCAGCTGGAGTGGCACCTGTCCAAGGATCAGATCCTCAGT CTGTACCTCAATCGCGCCCCGTTCGGCGGCACACTGCAAGGCGTCGCAGCCGCCAGTTGGGCCTACCTGGGCAAGTCGCC GCAAAACCTGACCCGCGCCGAGGCGGCATTGCTGGCGGTGCTGCCACAGGCGCCTAGCCGTCTGCGTCCTGATCGTCACC CGCAGCGCGCGCAACAGGCCCGCGATAAGGTGTTGAGACGTCTGGCCGAGTTTCAGGTGTGGCCGCGAGCAAGCGTGAAC GAAGCACTGGAAGAGCCTTTATGGCTGGCGCCGCGACAGGAACCGAGCCTGGCGCCGCTGCTGGCCCGACGCCTGAATCG ACCCAACAGCCCGCCACTGATCCGCACCACGCTGGACGCCTCACTGCAACGACGCATGGAAGACCTGCTGATGGGCTGGC GCGCACGCCTCCCGGAGCGAACGTCGGCAGCGATTCTGGTGGTCGAGGCTGAGAACATGGCCGTACGCGCGTACGTGGGC TCGGTGGACATCAACGACGCCAAGCGTTTCGGCCACGTGGACATGGTCACCGCCTTGCGTTCGCCGGGCTCGACGCTCAA GCCGTTCCTGTACGGCATGGCTATGGACGCCGGGCTGATCCATTCCGAATCGCTGATGCAGGATGTGCCGCGGCGCTATG GCGACTATCGACCGGGCAACTTTTCGAGCGGCTTCGGCGGACCGGTGGCAGTCAGTTCGGCGCTGTCGATGTCCCTCAAC CTGCCTGCCGTGCAATTGCTGGAGGTCTACGGGCCGAAGCGCTTCGCCGCCGAACTGCGCAATGGCGGCGTGCCCCTGAG CCTGCCGCCGCTGGCCGAGCCCAGTCTGGCACTGATTCTTGGTGGCGCGGGCAGTCGGTTAGAGGACTTGGTGACAGGCT ACAGCGCCTTCGCGCGCGGCGGGCGCAGTGCCGATGTTCGATTGCAACCGCAGGACCGACTGCGCGAGCGGCGCATGATG TCACCGGGCGCTGCGTGGATCATTCGCCGCATTCTCAGTGGTCAGTCGCGCCCGGACATCGACCCGCGCGCCGAGCTGGT ACAGCGTCCGCAACTGGCCTGGAAAACCGGCACCAGCTATGGCTTCCGCGATGCCTGGGCGATTGGCGTCGGACCGCGCT TTCTGGTCGGTGTGTGGATCGGTCGACCGGATGGCACACCGGTGCCAGGGCAGTTCGGGCTGGCTTCGGCAGCGCCGCTG ATGCTTCAGGTGCACGATGTACTGGTCAATCGCGACAGCCAGCGCGGGATCGCCGCACCGATGCAACCCGTGCCGCTGAA CGTCGGTGTAGCCGCCATCTGCTGGCCACTGGGTCAACCGATGAGCAAAAGCGCCCCCAATTGCCGGCGCCAACGCTTCG CCTGGACGCTGGACGGCACCACGCCACCCACCCTGCAAGCGGCCGACCAACCGCTCGGGCTGGGTTTGCAGGAACGTGTC TGGATCAATGCCAAGGGGTTGCGCGTCGCGGCCAATTGCCCGGACGCCCGAGCGCAGGACATCGCGCTGTGGCCTGCGCC TCTGGAGCCCTGGCTGCCCAGAGCAGAGCGGCGTGATGCACGCCTGCCACCCGCTGACCCGGATTGCCCGCCACAGAACC TGAACCTCGCGCCCCCGCTGAGCATTGTCGGTGTGCGCGAAGGCGACAACCTGCGCCTGCCTGCCGCCAGTCGTCAGGCT TTACGCCTCACGCTCTCGGCACTCGGCGGCAGTGGCCATCGCTGGTGGTTTATCGATGGCAAACCTCTGGCAGACACCGA CACCCGGCAAGACTTCACCCCCACCCTGAGCAAACCGGGGCGTTATCAGTTAAGCGTGCTGGACGAAAGCGGTCAGACGG CGCGGGTTGAATTCAGCGTGGTGGAGTGA
Upstream 100 bases:
>100_bases TGCATATGTACGTCCTGATTGGGGTCGTGAAGAAAATGGTCTGTCCGCTTTGGCTGTCGCAATGCGTGTCAGGTTCCGTG GATCATAAAGGCTCTTTGCG
Downstream 100 bases:
>100_bases ACGCAGAGCGTCAAGAAAGGCATTCCAACGCTGTGCGTGAGGAACGATAGGCCTTTGACTTCGTGCCCATACTCCAGCGT GAGCATGCTGCAGGGCGCGA
Product: penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MKPEFLLRLPRTFKWLAGAIMLLIALLWLADRLWPLPLPRDDLARVVLAEDGTPLWRFADTNGVWRYPVSNAQVSPYYLE ALLTYEDRWFYSHPGVNPLALLRATWQNLSGARVVSGGSTLSMQVARLLDPHSRTLSGKFRQLWRTLQLEWHLSKDQILS LYLNRAPFGGTLQGVAAASWAYLGKSPQNLTRAEAALLAVLPQAPSRLRPDRHPQRAQQARDKVLRRLAEFQVWPRASVN EALEEPLWLAPRQEPSLAPLLARRLNRPNSPPLIRTTLDASLQRRMEDLLMGWRARLPERTSAAILVVEAENMAVRAYVG SVDINDAKRFGHVDMVTALRSPGSTLKPFLYGMAMDAGLIHSESLMQDVPRRYGDYRPGNFSSGFGGPVAVSSALSMSLN LPAVQLLEVYGPKRFAAELRNGGVPLSLPPLAEPSLALILGGAGSRLEDLVTGYSAFARGGRSADVRLQPQDRLRERRMM SPGAAWIIRRILSGQSRPDIDPRAELVQRPQLAWKTGTSYGFRDAWAIGVGPRFLVGVWIGRPDGTPVPGQFGLASAAPL MLQVHDVLVNRDSQRGIAAPMQPVPLNVGVAAICWPLGQPMSKSAPNCRRQRFAWTLDGTTPPTLQAADQPLGLGLQERV WINAKGLRVAANCPDARAQDIALWPAPLEPWLPRAERRDARLPPADPDCPPQNLNLAPPLSIVGVREGDNLRLPAASRQA LRLTLSALGGSGHRWWFIDGKPLADTDTRQDFTPTLSKPGRYQLSVLDESGQTARVEFSVVE
Sequences:
>Translated_782_residues MKPEFLLRLPRTFKWLAGAIMLLIALLWLADRLWPLPLPRDDLARVVLAEDGTPLWRFADTNGVWRYPVSNAQVSPYYLE ALLTYEDRWFYSHPGVNPLALLRATWQNLSGARVVSGGSTLSMQVARLLDPHSRTLSGKFRQLWRTLQLEWHLSKDQILS LYLNRAPFGGTLQGVAAASWAYLGKSPQNLTRAEAALLAVLPQAPSRLRPDRHPQRAQQARDKVLRRLAEFQVWPRASVN EALEEPLWLAPRQEPSLAPLLARRLNRPNSPPLIRTTLDASLQRRMEDLLMGWRARLPERTSAAILVVEAENMAVRAYVG SVDINDAKRFGHVDMVTALRSPGSTLKPFLYGMAMDAGLIHSESLMQDVPRRYGDYRPGNFSSGFGGPVAVSSALSMSLN LPAVQLLEVYGPKRFAAELRNGGVPLSLPPLAEPSLALILGGAGSRLEDLVTGYSAFARGGRSADVRLQPQDRLRERRMM SPGAAWIIRRILSGQSRPDIDPRAELVQRPQLAWKTGTSYGFRDAWAIGVGPRFLVGVWIGRPDGTPVPGQFGLASAAPL MLQVHDVLVNRDSQRGIAAPMQPVPLNVGVAAICWPLGQPMSKSAPNCRRQRFAWTLDGTTPPTLQAADQPLGLGLQERV WINAKGLRVAANCPDARAQDIALWPAPLEPWLPRAERRDARLPPADPDCPPQNLNLAPPLSIVGVREGDNLRLPAASRQA LRLTLSALGGSGHRWWFIDGKPLADTDTRQDFTPTLSKPGRYQLSVLDESGQTARVEFSVVE >Mature_782_residues MKPEFLLRLPRTFKWLAGAIMLLIALLWLADRLWPLPLPRDDLARVVLAEDGTPLWRFADTNGVWRYPVSNAQVSPYYLE ALLTYEDRWFYSHPGVNPLALLRATWQNLSGARVVSGGSTLSMQVARLLDPHSRTLSGKFRQLWRTLQLEWHLSKDQILS LYLNRAPFGGTLQGVAAASWAYLGKSPQNLTRAEAALLAVLPQAPSRLRPDRHPQRAQQARDKVLRRLAEFQVWPRASVN EALEEPLWLAPRQEPSLAPLLARRLNRPNSPPLIRTTLDASLQRRMEDLLMGWRARLPERTSAAILVVEAENMAVRAYVG SVDINDAKRFGHVDMVTALRSPGSTLKPFLYGMAMDAGLIHSESLMQDVPRRYGDYRPGNFSSGFGGPVAVSSALSMSLN LPAVQLLEVYGPKRFAAELRNGGVPLSLPPLAEPSLALILGGAGSRLEDLVTGYSAFARGGRSADVRLQPQDRLRERRMM SPGAAWIIRRILSGQSRPDIDPRAELVQRPQLAWKTGTSYGFRDAWAIGVGPRFLVGVWIGRPDGTPVPGQFGLASAAPL MLQVHDVLVNRDSQRGIAAPMQPVPLNVGVAAICWPLGQPMSKSAPNCRRQRFAWTLDGTTPPTLQAADQPLGLGLQERV WINAKGLRVAANCPDARAQDIALWPAPLEPWLPRAERRDARLPPADPDCPPQNLNLAPPLSIVGVREGDNLRLPAASRQA LRLTLSALGGSGHRWWFIDGKPLADTDTRQDFTPTLSKPGRYQLSVLDESGQTARVEFSVVE
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=764, Percent_Identity=59.2931937172775, Blast_Score=890, Evalue=0.0, Organism=Escherichia coli, GI87082258, Length=184, Percent_Identity=35.8695652173913, Blast_Score=110, Evalue=5e-25, Organism=Escherichia coli, GI1786343, Length=585, Percent_Identity=25.4700854700855, Blast_Score=100, Evalue=5e-22, Organism=Escherichia coli, GI1789601, Length=154, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 86392; Mature: 86392
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEFLLRLPRTFKWLAGAIMLLIALLWLADRLWPLPLPRDDLARVVLAEDGTPLWRFAD CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEECCCCCEEEEEC TNGVWRYPVSNAQVSPYYLEALLTYEDRWFYSHPGVNPLALLRATWQNLSGARVVSGGST CCCEEECCCCCCCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCEEECCCCH LSMQVARLLDPHSRTLSGKFRQLWRTLQLEWHLSKDQILSLYLNRAPFGGTLQGVAAASW HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHH AYLGKSPQNLTRAEAALLAVLPQAPSRLRPDRHPQRAQQARDKVLRRLAEFQVWPRASVN HHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH EALEEPLWLAPRQEPSLAPLLARRLNRPNSPPLIRTTLDASLQRRMEDLLMGWRARLPER HHHHCCEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCC TSAAILVVEAENMAVRAYVGSVDINDAKRFGHVDMVTALRSPGSTLKPFLYGMAMDAGLI CCEEEEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCH HSESLMQDVPRRYGDYRPGNFSSGFGGPVAVSSALSMSLNLPAVQLLEVYGPKRFAAELR HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH NGGVPLSLPPLAEPSLALILGGAGSRLEDLVTGYSAFARGGRSADVRLQPQDRLRERRMM CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCC SPGAAWIIRRILSGQSRPDIDPRAELVQRPQLAWKTGTSYGFRDAWAIGVGPRFLVGVWI CCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCEEEECCCCEEEEEEEE GRPDGTPVPGQFGLASAAPLMLQVHDVLVNRDSQRGIAAPMQPVPLNVGVAAICWPLGQP ECCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC MSKSAPNCRRQRFAWTLDGTTPPTLQAADQPLGLGLQERVWINAKGLRVAANCPDARAQD CCCCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCC IALWPAPLEPWLPRAERRDARLPPADPDCPPQNLNLAPPLSIVGVREGDNLRLPAASRQA EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCHH LRLTLSALGGSGHRWWFIDGKPLADTDTRQDFTPTLSKPGRYQLSVLDESGQTARVEFSV HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE VE EC >Mature Secondary Structure MKPEFLLRLPRTFKWLAGAIMLLIALLWLADRLWPLPLPRDDLARVVLAEDGTPLWRFAD CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEECCCCCEEEEEC TNGVWRYPVSNAQVSPYYLEALLTYEDRWFYSHPGVNPLALLRATWQNLSGARVVSGGST CCCEEECCCCCCCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCEEECCCCH LSMQVARLLDPHSRTLSGKFRQLWRTLQLEWHLSKDQILSLYLNRAPFGGTLQGVAAASW HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHH AYLGKSPQNLTRAEAALLAVLPQAPSRLRPDRHPQRAQQARDKVLRRLAEFQVWPRASVN HHHCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH EALEEPLWLAPRQEPSLAPLLARRLNRPNSPPLIRTTLDASLQRRMEDLLMGWRARLPER HHHHCCEEECCCCCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCC TSAAILVVEAENMAVRAYVGSVDINDAKRFGHVDMVTALRSPGSTLKPFLYGMAMDAGLI CCEEEEEEECCCEEEEEEECCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCH HSESLMQDVPRRYGDYRPGNFSSGFGGPVAVSSALSMSLNLPAVQLLEVYGPKRFAAELR HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH NGGVPLSLPPLAEPSLALILGGAGSRLEDLVTGYSAFARGGRSADVRLQPQDRLRERRMM CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCC SPGAAWIIRRILSGQSRPDIDPRAELVQRPQLAWKTGTSYGFRDAWAIGVGPRFLVGVWI CCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCEEEECCCCEEEEEEEE GRPDGTPVPGQFGLASAAPLMLQVHDVLVNRDSQRGIAAPMQPVPLNVGVAAICWPLGQP ECCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC MSKSAPNCRRQRFAWTLDGTTPPTLQAADQPLGLGLQERVWINAKGLRVAANCPDARAQD CCCCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCC IALWPAPLEPWLPRAERRDARLPPADPDCPPQNLNLAPPLSIVGVREGDNLRLPAASRQA EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCHH LRLTLSALGGSGHRWWFIDGKPLADTDTRQDFTPTLSKPGRYQLSVLDESGQTARVEFSV HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE VE EC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]