Click here to switch to the map view.

The map label for this gene is 66047617

Identifier: 66047617

GI number: 66047617

Start: 5251748

End: 5252707

Strand: Direct

Name: 66047617

Synonym: Psyr_4390

Alternate gene names: NA

Gene position: 5251748-5252707 (Clockwise)

Preceding gene: 66047614

Following gene: 66047618

Centisome position: 86.18

GC content: 64.27

Gene sequence:

>960_bases
ATGAGCAGTCGCATTACCCTGGTGCTTGCTGTCCTGTTTTTGTTGGGGGCGTTGATTGCCGCGTATCTGGGGATCGCCGT
CAGCAAACCAGCCGAGGCACCTGCAGCTGTCATTCCGCCCAGCGAACCTGTCACCACCGAAACAGCGATCCAGACGCCTC
CGACGCCTCCCGTCGAGGACGCTTTGCGTCACAACGTCGTGGTATTGGCCAGGGATATCCCTGCCTACACCGCAATCACG
GCCGATGACCTGACCATCGAGCGCCTCAAGGTCGCGCCACCCGGGAGCTTTGAAGCCATCGACAAGATTGTCGGGCGCAG
CAGCTGGCGCACGCTGACCGCCGGGAGCTGGCTCACCGAGAGCAGCTTCGACACAGGCGGCACCCTGGCGCGGATGATTC
GGCCACATGAGCGGGCCCTGGCATTGCAGGTCGATGAAGTGACGGGCGCCTCCGGGCAACTCAGCCCCGGCGACTACGTG
GATGTACTGCTTTACCTGCCTGAGGACGTGAGCAATCCGAATCGGTCGAGCCAGGTTGTGGTGCCTGCCCTGCGCATTCT
CGGCGTTGGCGCGCTGCTCGGTCCGGACCGCAACGGCAAGCCGGTGCAGGACATCAACGCTGACGAACGCCTCAAACAGG
AGCAGCAGCGGATCAACGCGCGAACCGTCACGGTCGCGGTGCCGCAAGCCCTGGTGGCGCGCCTGATGCTGGCGTCGCAA
ACCGGTGTGCTGCGTCTGGCCGTGCGCAGCGCCGACGAGGGCAACCTGCAGGATTACTGGGCCAACGAAGCCGGCGGCCT
TGACGCTGCCGAGCGACTCGATTCAGCCAACCGCCAACTGGTCAGCTTCAGACAACTGAGCCTGGGGCCGGCCAGCGCGC
CAATATCAGGCGCAACCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGA

Upstream 100 bases:

>100_bases
CACATAACGGACATTTGACCTTGTCCTCTATTACCTGCTGGTGAAATTGCCGCACCGCGTGTGTTGAAGTTGTCCTGCGA
TGACAAAGGGAAAAGTTGCC

Downstream 100 bases:

>100_bases
TTGAGCAAGGATTGCATTTGATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGTTTGCTGGCGTTAGTCATCGCAACA
TTGTGCGCGCCAGGCGCGTG

Product: Flp pilus assembly CpaB

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Flp Pilus Assembly Protein RcpC/CpaB; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Signal Peptide Protein; Flp Pilus Assembly Protein CpaB-Like Protein; SAF Domain-Containing Protein

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVEDALRHNVVVLARDIPAYTAIT
ADDLTIERLKVAPPGSFEAIDKIVGRSSWRTLTAGSWLTESSFDTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYV
DVLLYLPEDVSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQALVARLMLASQ
TGVLRLAVRSADEGNLQDYWANEAGGLDAAERLDSANRQLVSFRQLSLGPASAPISGATPRTSRAVEVIRGNQITQQTP

Sequences:

>Translated_319_residues
MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVEDALRHNVVVLARDIPAYTAIT
ADDLTIERLKVAPPGSFEAIDKIVGRSSWRTLTAGSWLTESSFDTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYV
DVLLYLPEDVSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQALVARLMLASQ
TGVLRLAVRSADEGNLQDYWANEAGGLDAAERLDSANRQLVSFRQLSLGPASAPISGATPRTSRAVEVIRGNQITQQTP
>Mature_318_residues
SSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVEDALRHNVVVLARDIPAYTAITA
DDLTIERLKVAPPGSFEAIDKIVGRSSWRTLTAGSWLTESSFDTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVD
VLLYLPEDVSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQALVARLMLASQT
GVLRLAVRSADEGNLQDYWANEAGGLDAAERLDSANRQLVSFRQLSLGPASAPISGATPRTSRAVEVIRGNQITQQTP

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33894; Mature: 33763

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHH
ALRHNVVVLARDIPAYTAITADDLTIERLKVAPPGSFEAIDKIVGRSSWRTLTAGSWLTE
HHHCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEECCCCEEC
SSFDTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDVSNPNRSSQVV
CCCCCCHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEH
VPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQALVARLMLASQ
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCC
TGVLRLAVRSADEGNLQDYWANEAGGLDAAERLDSANRQLVSFRQLSLGPASAPISGATP
CCEEEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RTSRAVEVIRGNQITQQTP
CCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHH
ALRHNVVVLARDIPAYTAITADDLTIERLKVAPPGSFEAIDKIVGRSSWRTLTAGSWLTE
HHHCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEECCCCEEC
SSFDTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDVSNPNRSSQVV
CCCCCCHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEH
VPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQALVARLMLASQ
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCC
TGVLRLAVRSADEGNLQDYWANEAGGLDAAERLDSANRQLVSFRQLSLGPASAPISGATP
CCEEEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RTSRAVEVIRGNQITQQTP
CCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA