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The map label for this gene is rlpA [H]

Identifier: 66047589

GI number: 66047589

Start: 5215367

End: 5216395

Strand: Reverse

Name: rlpA [H]

Synonym: Psyr_4362

Alternate gene names: 66047589

Gene position: 5216395-5215367 (Counterclockwise)

Preceding gene: 66047590

Following gene: 66047588

Centisome position: 85.6

GC content: 62.78

Gene sequence:

>1029_bases
ATGCGGGCATCGCCGATTCTTCAATCATTCAAGCTTCTGGCGCTGACCGGCCTGGCAGTGCTGGTTGCCAGTTGCTCGTC
GCCGTCACGCACAACGTCGTCGCAGCCGCCAAAAGGCGGTGCAGTCGTGCGCTCGATGCCGGGCCTGGACATCAACCGAG
CCCACAAGGACGGCGCGCCGTGGTGGGATGTGGATGTCTCGCGTATCCCTGACGCAACGCCGACCCTGCACACCGGGGCC
TACAAGGCCAACCCGTACACCGTGCTGGGCAAGACCTACTTCCCGATGAGCGATGCCAAGCGTTACGTCGCTTCGGGCAC
CGCCTCCTGGTATGGCACCAAGTTTCATGGCCAGAACACTGCCAACGGCGAAGTGTATGACCTGTACGGCATGAGCGCCG
CGCACAAGACCCTGCCGCTGCCCAGCTACGTCAAAGTGACCAACCTGGACAACAATCGCACGGTGATCCTGCGCGTCAAC
GATCGCGGGCCGTTCTATTCCGACCGCATCATCGACCTGTCCTACGCGGCCGCCAAAAAGCTCGGCTATGCCGAAAGCGG
CACGGCTCGGGTCAAGGTCGAGGGTATCGACCCGCAGGAATGGTGGGCGCAACGGGGTCGTCCGGCGCCGCTGTTGCTCA
ATCAGCCGCAGGTCGTTGCCCAGGCGACGCCGCCTGCGCTGTCCACCTCGACCGGCACCGTCGAGCAGTACACACCGCCG
CCTCAGCAGCACGCTGCACCCGTCGTGCCGATGCAGGTTGACGCAAAAAAAAACGCTTCAGGACAAGCCGCTGGGCTGTT
TCTCCAGGTGGGAGCCTTCGCCAACCCGGACGCTGCGGAACTCCTGAGGTCGAAATTGAGCGGGATGGTTCGAGCGCCGG
TGTTCGTCAGCTCGATAGCGCGCAATCAGCAAACACTCTATCGAGTGCGGATGGGACCGATCGACACGCAGGGTGAAGCC
CAGCAGCTGCAAAACAGCGTCAGGTCGGCCAATCTGGGTCAGCCGAGCGTAGTGACATCGGATCAGTAA

Upstream 100 bases:

>100_bases
ACAATTTTTATGCAATCACCCGTTATAACCGCAGTGTGATGTACGCCATGGCCGTATATCAGCTGTCTGAATCGTTGGTT
CAAGCTCGAGGCGTCAAGTA

Downstream 100 bases:

>100_bases
GTTCTTCGACAATCGTTCCCCGGCAATAATGGGGGACGATATGCAGTCGCACGCGGCGCAGATTTGCTTTCAGGGCAAGC
GTTGCAGGTAACTGCCCACA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQPPKGGAVVRSMPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGA
YKANPYTVLGKTYFPMSDAKRYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVN
DRGPFYSDRIIDLSYAAAKKLGYAESGTARVKVEGIDPQEWWAQRGRPAPLLLNQPQVVAQATPPALSTSTGTVEQYTPP
PQQHAAPVVPMQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIARNQQTLYRVRMGPIDTQGEA
QQLQNSVRSANLGQPSVVTSDQ

Sequences:

>Translated_342_residues
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQPPKGGAVVRSMPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGA
YKANPYTVLGKTYFPMSDAKRYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVN
DRGPFYSDRIIDLSYAAAKKLGYAESGTARVKVEGIDPQEWWAQRGRPAPLLLNQPQVVAQATPPALSTSTGTVEQYTPP
PQQHAAPVVPMQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIARNQQTLYRVRMGPIDTQGEA
QQLQNSVRSANLGQPSVVTSDQ
>Mature_342_residues
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQPPKGGAVVRSMPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGA
YKANPYTVLGKTYFPMSDAKRYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVN
DRGPFYSDRIIDLSYAAAKKLGYAESGTARVKVEGIDPQEWWAQRGRPAPLLLNQPQVVAQATPPALSTSTGTVEQYTPP
PQQHAAPVVPMQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIARNQQTLYRVRMGPIDTQGEA
QQLQNSVRSANLGQPSVVTSDQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=148, Percent_Identity=37.1621621621622, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 36761; Mature: 36761

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQPPKGGAVVRSMPGLDINRAHKDGAP
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
WWDVDVSRIPDATPTLHTGAYKANPYTVLGKTYFPMSDAKRYVASGTASWYGTKFHGQNT
EEECCHHHCCCCCCCEECCCCCCCCEEEECCEECCHHHHHHHHHCCCCCCCEEEECCCCC
ANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVNDRGPFYSDRIIDLSYAAAKK
CCCCEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEHHHHHHH
LGYAESGTARVKVEGIDPQEWWAQRGRPAPLLLNQPQVVAQATPPALSTSTGTVEQYTPP
CCCCCCCCEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC
PQQHAAPVVPMQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIA
CHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
RNQQTLYRVRMGPIDTQGEAQQLQNSVRSANLGQPSVVTSDQ
HCHHEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEECCCC
>Mature Secondary Structure
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQPPKGGAVVRSMPGLDINRAHKDGAP
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
WWDVDVSRIPDATPTLHTGAYKANPYTVLGKTYFPMSDAKRYVASGTASWYGTKFHGQNT
EEECCHHHCCCCCCCEECCCCCCCCEEEECCEECCHHHHHHHHHCCCCCCCEEEECCCCC
ANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVNDRGPFYSDRIIDLSYAAAKK
CCCCEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEHHHHHHH
LGYAESGTARVKVEGIDPQEWWAQRGRPAPLLLNQPQVVAQATPPALSTSTGTVEQYTPP
CCCCCCCCEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC
PQQHAAPVVPMQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIA
CHHHCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
RNQQTLYRVRMGPIDTQGEAQQLQNSVRSANLGQPSVVTSDQ
HCHHEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]