| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ydeG [H]
Identifier: 66047549
GI number: 66047549
Start: 5174459
End: 5175679
Strand: Reverse
Name: ydeG [H]
Synonym: Psyr_4322
Alternate gene names: 66047549
Gene position: 5175679-5174459 (Counterclockwise)
Preceding gene: 66047550
Following gene: 66047548
Centisome position: 84.93
GC content: 52.42
Gene sequence:
>1221_bases ATGAGTACGCTTCCGCGACGCACCTATCTGTATTTCATCGCGCAATCCATTAACCTGACCACCGCTGTAATGTCCGTGAC CATGGCCGCTATTGTCGGCTCCGCACTGGCACCTGAAGCCCGTTTTTCAACGGTGCCGTATGGTTTACAGTTCCTGTTCC TGGTGCTGGCCACATATCCCGCTTCCAGGCTGATGAGCCGGATCGGTCGGAAAAAAGCCTTCATGTTTGGCGCCATACCT CTGGTGGCATCCGGCTTGAGTGGCTTCTGGGCAGTCGAGCACCAGCATTTTCCGATGCTGATGTTTAGCCATTCGGCACT CGGGGTTTATATCGCTTTTGCCAACTTCAACCGATTTGCTGCAACCGACAACCTTGATCAAAAGTTAAAGCCCAAAGCCA TCTCTCTGGTTGTAGCCGGTGGGGTTATCGCCGCCGTGGTGGGACCGACACTGACTGAGGTGCTCAGGGACTTGGGCGGC TACTCTCTATTTTCATTGTGCTACGCCTCGTTCATCGGTCTGGCTGTACTATCTTTTCTGGTCACCGTTTGCCTGCCTGA CGATCCGGTGATGCCATTAGTTTCCAGAGGAAGCCCAGAGACCAAGCCGCCGCAAGTGATGACGTCGACGATGTTGATCG CTATGTCTGTTGCCGCAATAGGCTACGCAATCATGAACGTGCTGATGATTCAGGCTTCAATGCACATGAAGCACATGCAC GAGGATTTTTCGGATGTGCGCTTGGCGATCCAGTGGCATGTGATAGCGATGTTTGCTCCGTCTTTTTTTACGGGGGCAAT TATCCAGAAACTAGGGATCAAAACCACCCTCTGCTTGGGCGTCCTCATGCTGGCCGGCTGCTCAGCCATAAACATGGGAT CAAGCTCTTACGGCGCCATGGTCTTCGCTCTGATCATCCTTGGCTCAGGCTGGAATCTAACCTATGTGGGAGGCGGAGCT CTGTTGGCTCAAGCCCTTCAGAGCAGCTCGCAAGCCTTGCGCATGCAGGGAAAAAACGACCTTGCTATCGCTGTTTTCGC AACGATCGGTGCGTTTACTCCTTCGCTGTTGCTTAGCACGGTAGGCTGGTTTGGTACCAACGCTATTTGTATTGGGCTAT GCATCTTTTTGTTAGCTGTAATTGTTGCGCTGTTGGATCAAAAAAAACGGGCCACGCCATGGAGGGAGGCATTAAATGAG TGTGCTTATCAGAACTCATGA
Upstream 100 bases:
>100_bases ACGTACGTCGAAAAAGGTTGGGTAAAGGTAAAGAACGACTGATCTGTGACTTTCCCAACGCTGAAATTGATTTGTCCCCC TATCATGAGCGCGCCCTACG
Downstream 100 bases:
>100_bases TCGAGTTTTAACCAAGCTGGAAATGAATAGCCCAGGAGGTAGTCACAAATATCGCGCAGCTAATTTAATTGTAAAAAATG CGCTACGCAATGGGAAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSTLPRRTYLYFIAQSINLTTAVMSVTMAAIVGSALAPEARFSTVPYGLQFLFLVLATYPASRLMSRIGRKKAFMFGAIP LVASGLSGFWAVEHQHFPMLMFSHSALGVYIAFANFNRFAATDNLDQKLKPKAISLVVAGGVIAAVVGPTLTEVLRDLGG YSLFSLCYASFIGLAVLSFLVTVCLPDDPVMPLVSRGSPETKPPQVMTSTMLIAMSVAAIGYAIMNVLMIQASMHMKHMH EDFSDVRLAIQWHVIAMFAPSFFTGAIIQKLGIKTTLCLGVLMLAGCSAINMGSSSYGAMVFALIILGSGWNLTYVGGGA LLAQALQSSSQALRMQGKNDLAIAVFATIGAFTPSLLLSTVGWFGTNAICIGLCIFLLAVIVALLDQKKRATPWREALNE CAYQNS
Sequences:
>Translated_406_residues MSTLPRRTYLYFIAQSINLTTAVMSVTMAAIVGSALAPEARFSTVPYGLQFLFLVLATYPASRLMSRIGRKKAFMFGAIP LVASGLSGFWAVEHQHFPMLMFSHSALGVYIAFANFNRFAATDNLDQKLKPKAISLVVAGGVIAAVVGPTLTEVLRDLGG YSLFSLCYASFIGLAVLSFLVTVCLPDDPVMPLVSRGSPETKPPQVMTSTMLIAMSVAAIGYAIMNVLMIQASMHMKHMH EDFSDVRLAIQWHVIAMFAPSFFTGAIIQKLGIKTTLCLGVLMLAGCSAINMGSSSYGAMVFALIILGSGWNLTYVGGGA LLAQALQSSSQALRMQGKNDLAIAVFATIGAFTPSLLLSTVGWFGTNAICIGLCIFLLAVIVALLDQKKRATPWREALNE CAYQNS >Mature_405_residues STLPRRTYLYFIAQSINLTTAVMSVTMAAIVGSALAPEARFSTVPYGLQFLFLVLATYPASRLMSRIGRKKAFMFGAIPL VASGLSGFWAVEHQHFPMLMFSHSALGVYIAFANFNRFAATDNLDQKLKPKAISLVVAGGVIAAVVGPTLTEVLRDLGGY SLFSLCYASFIGLAVLSFLVTVCLPDDPVMPLVSRGSPETKPPQVMTSTMLIAMSVAAIGYAIMNVLMIQASMHMKHMHE DFSDVRLAIQWHVIAMFAPSFFTGAIIQKLGIKTTLCLGVLMLAGCSAINMGSSSYGAMVFALIILGSGWNLTYVGGGAL LAQALQSSSQALRMQGKNDLAIAVFATIGAFTPSLLLSTVGWFGTNAICIGLCIFLLAVIVALLDQKKRATPWREALNEC AYQNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43501; Mature: 43370
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLPRRTYLYFIAQSINLTTAVMSVTMAAIVGSALAPEARFSTVPYGLQFLFLVLATYP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC ASRLMSRIGRKKAFMFGAIPLVASGLSGFWAVEHQHFPMLMFSHSALGVYIAFANFNRFA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCCCEEEEEEECCCHHC ATDNLDQKLKPKAISLVVAGGVIAAVVGPTLTEVLRDLGGYSLFSLCYASFIGLAVLSFL CCCCCCHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH VTVCLPDDPVMPLVSRGSPETKPPQVMTSTMLIAMSVAAIGYAIMNVLMIQASMHMKHMH HHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDFSDVRLAIQWHVIAMFAPSFFTGAIIQKLGIKTTLCLGVLMLAGCSAINMGSSSYGAM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHH VFALIILGSGWNLTYVGGGALLAQALQSSSQALRMQGKNDLAIAVFATIGAFTPSLLLST HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH VGWFGTNAICIGLCIFLLAVIVALLDQKKRATPWREALNECAYQNS HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure STLPRRTYLYFIAQSINLTTAVMSVTMAAIVGSALAPEARFSTVPYGLQFLFLVLATYP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC ASRLMSRIGRKKAFMFGAIPLVASGLSGFWAVEHQHFPMLMFSHSALGVYIAFANFNRFA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEECCCCEEEEEEECCCHHC ATDNLDQKLKPKAISLVVAGGVIAAVVGPTLTEVLRDLGGYSLFSLCYASFIGLAVLSFL CCCCCCHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH VTVCLPDDPVMPLVSRGSPETKPPQVMTSTMLIAMSVAAIGYAIMNVLMIQASMHMKHMH HHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDFSDVRLAIQWHVIAMFAPSFFTGAIIQKLGIKTTLCLGVLMLAGCSAINMGSSSYGAM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHH VFALIILGSGWNLTYVGGGALLAQALQSSSQALRMQGKNDLAIAVFATIGAFTPSLLLST HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH VGWFGTNAICIGLCIFLLAVIVALLDQKKRATPWREALNECAYQNS HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]