Click here to switch to the map view.

The map label for this gene is hopAE1

Identifier: 66047496

GI number: 66047496

Start: 5091033

End: 5093777

Strand: Reverse

Name: hopAE1

Synonym: Psyr_4269

Alternate gene names: 66047496

Gene position: 5093777-5091033 (Counterclockwise)

Preceding gene: 66047498

Following gene: 66047491

Centisome position: 83.59

GC content: 61.86

Gene sequence:

>2745_bases
ATGATGCCCTCTCAGATCACGCGCTCCTCTCATTCCTCATTGCCGGAGGTTGCTCCCGCGTCCGGCGATGCAGCCGGCGT
TAGTGAGCAAACTCCGCAGCAGGCTCGTACCGTGGCGTTTTTTGCCTCCGGCGAGCTGGCCGTGGCATTTGGTCGCACCT
CGACCGCGCCAGCGCAGGACTCTGTGCGTCTGTTGTCTGCTCTTCAGCGTGAGCTGGATAAACAGCAGCCGTCCTGGCCC
ACAGTTGCCCAGCTCTGCCACAGCCTGGCCGAGGTCGCCAAGACCGAGCAGGGTTGGCACCAACTTGCCAGCGAGGATCA
GGCGCCGGCGCCGGCGCTGAAAGACCTGCTTGAGCGCTGTATTGGCCGGCTGGCCGATATGCCTGCTTCTCATGCATCTC
ACGACTCGCTGTCGCTGGCCTGCGAGGGGCTCAGGACGGCGCGGCTGCACCAATCCGTCGCTCGTTTGACTGCCCGGCCG
CCCGCTCTGGCCCGGGCGATTCCGGATCTGCTGGCGTTGACTCATCTGGATCCCGAGACGCTGGGCGCAGAGCCCCCCGT
TGTTTCGTCTTACACGCTCTTCAGCCATTTCGTTCACACGGCCAAGCAGCGTACTGCGGAGTTGAATGACAGCCTCCAGC
GTCAACCCGAAGCGGTCGTCAGTCTGCTGCGCTCACATGCCGACACGCTCAATGACCTGGAGACGTTGCCCGGCGCATTG
CAGGCATTGACCGAAAATTGCCAGGACGCGCCTGCCTGCAATGAATTGCGCGAGCTGGCGGAAGTGGTGGGGGCGCTGCT
GCAGCTATTGCGCGAACACGGCATTTTGCCGAGGCTGGAAGCAATCTCCATCGAGCCAGGCGAAGCACCTGCACCTGGCC
ATGAGGCTGCCGAGCCCCGGCTGACGAGAAGCCAGGCATTGCTCAAGGCCGGCGGCAATCTGGTGCGCAAGTTTGATGCC
TATGGGGCGCTCGCGCCAATGGACGACAAGGGGTTGCTGGCCTTGATGCGCACCCCGGCGCCACACCTGTCGCCCGATCA
GATGCATGCCTTCCTGAACAAGCATGTGCTGCATCTCACGCAGGAACAACGCGATATCGTCAGCAATACCCCGTTGCCCT
TCGCCCCTGAAGGAGACATCGAGGCCCGGTGCGGCATGGGGTTCGATGAAAAACTGCGGTTGGCGCTGGCCAACGGTTCG
CTGGTATTGAGCGAGGAGCAACTGGCCCGTCTTGGTCATTTGCCCAGTGCTGCTACCACGACGTCCGACGTTGTGAAGAC
GCTGCTGGAAAAACCATCGTCGGCGCTGAGCGAAGCCGAGCGTGACATGTTGGGCGCAATCGTTCAGGCCAACGGCCAGG
GTCAACTCGACGCCTGGCGCGCTCACAACGAACAGTTGCCTGCAGTGTTGAGCCGCTCGGGGCTACCCTCTGATGTGAAA
GACGAGTTGCTCAGCCTTAACCAAAGCATGAATGCCGAACTGGGCACGCTCAAGAACGGTGCCTCGTTCAAGAGTCGCAT
CCTTGCAAGTCCGGCGATGCTGCTCGCGCTGGCACCCTTGCCACTGGCCGTGGCGTTCGTCAGCAAGGACAACTCCTACA
GCTCATCGCTGGTTGCCCACTTCACCAAGAACGCAGTGTTCATGGCTGGCCTGATGATGAACGAGCTGACCAACGCGCGG
ACCAATGTCGATCACGGCCTGAACCGCTACTTCGTCACCGTGCTGGCCAACGCCATCGTGGCGCAGCCCACCTTTGCCAG
GAACGAACACCTGCTGGAGCAGGTCGGCTTCGGTATCGCAACGGCCGTGGCATCGGGCGCAGCCACGCTGGGCGTATTCA
ACCGCGAATCGATCGTCGCCGCCTTCAAGCTCGCCAAGAGCAAGCTTTCGAGGCAAGACACCGGGAACGCCAGCATCCCG
GAGGAAGACCATCTTGCCGTGGTCAGGCATTTCGACGTCAGCGAGCATTTTGCCCAGCAGATGAAAGTGGCGACCGAATT
GTACAAGCAAGACAAAAGCATCACCGACATCATGAACTCGAGCCTGACGTACCTGGGCACCAAGAGCAGCGAGTTCCAGG
CCAGGTTCGAAAGCGTCGATGCCCTGCGCGCAGGTCTGCAACTGGCCGAGGGGGAGCGCAAGGCGGACCCTGACTTCTAC
ACCAAACTGGGCCTGGTGGCCCTGACGGCGAGTATCGGTGCGGCGCTGGTGATGTTGATGAAAAGCATGGTCGGCAAAGC
CGATTACGCGGCGGACGGCGTCTGGTGCGTATCGGAGATGCTCAAGCTGGCCATGAACCCTGAAGTCGACATGCAAAAGG
CGGTTCAGGTCTTCAAGGAAATCGTCGGCCTGAATCTGGTGATGACAGGGTTTCTGGGCGTCAACAAAGTCTGGAATTTT
CTCGACAAGGGGATCAAAGGCTATGCCTCCGGTGCTGCGGTCCTGACCGCAGCCAACCTCACGCTTCCCGGTATGGTTGG
AGAAGTGGCTGGCGCAGCAGCCGGCAAAGGCTTGAGCTACCTGACTGACAAAGGCAAGGCGGCGCATCAGGCTGGCAGGG
CGGCTGCGTCCTGGGCCGGGAATTACGTCGGCACCTCGCGTCTGGGGAGCGCGGTCGGCACCCTGCAAACGGCAATTCCG
GGCAGGATCGCAGGCGGGCAGGTAGTGGCGGGTCTCTACGACCGCTTCCGGTACCTGACCGGGTCGCACCCGACGCCGGC
ACAGCAAGCGGCTGGCGAGCCATAA

Upstream 100 bases:

>100_bases
ATCACGCATCGATTTACCTTCAACTGCCGGGAACCGTTCCGGGCCGGACGACACTCAGTCGGTCTGTTGCCCATACCCAC
CGACAGTAGGTAAAAACGCC

Downstream 100 bases:

>100_bases
GCCTGTAGCCGGCAGACCGCCGCCTGCAACGCAGGCGGTGGTCTCGCCACCGCCAATAATCCCTTCGCATCAACCCGCAC
AAGCGTTTAGCGGCGGCCTG

Product: type III effector HopAE1

Products: NA

Alternate protein names: Type III effector holPsyAE

Number of amino acids: Translated: 914; Mature: 914

Protein sequence:

>914_residues
MMPSQITRSSHSSLPEVAPASGDAAGVSEQTPQQARTVAFFASGELAVAFGRTSTAPAQDSVRLLSALQRELDKQQPSWP
TVAQLCHSLAEVAKTEQGWHQLASEDQAPAPALKDLLERCIGRLADMPASHASHDSLSLACEGLRTARLHQSVARLTARP
PALARAIPDLLALTHLDPETLGAEPPVVSSYTLFSHFVHTAKQRTAELNDSLQRQPEAVVSLLRSHADTLNDLETLPGAL
QALTENCQDAPACNELRELAEVVGALLQLLREHGILPRLEAISIEPGEAPAPGHEAAEPRLTRSQALLKAGGNLVRKFDA
YGALAPMDDKGLLALMRTPAPHLSPDQMHAFLNKHVLHLTQEQRDIVSNTPLPFAPEGDIEARCGMGFDEKLRLALANGS
LVLSEEQLARLGHLPSAATTTSDVVKTLLEKPSSALSEAERDMLGAIVQANGQGQLDAWRAHNEQLPAVLSRSGLPSDVK
DELLSLNQSMNAELGTLKNGASFKSRILASPAMLLALAPLPLAVAFVSKDNSYSSSLVAHFTKNAVFMAGLMMNELTNAR
TNVDHGLNRYFVTVLANAIVAQPTFARNEHLLEQVGFGIATAVASGAATLGVFNRESIVAAFKLAKSKLSRQDTGNASIP
EEDHLAVVRHFDVSEHFAQQMKVATELYKQDKSITDIMNSSLTYLGTKSSEFQARFESVDALRAGLQLAEGERKADPDFY
TKLGLVALTASIGAALVMLMKSMVGKADYAADGVWCVSEMLKLAMNPEVDMQKAVQVFKEIVGLNLVMTGFLGVNKVWNF
LDKGIKGYASGAAVLTAANLTLPGMVGEVAGAAAGKGLSYLTDKGKAAHQAGRAAASWAGNYVGTSRLGSAVGTLQTAIP
GRIAGGQVVAGLYDRFRYLTGSHPTPAQQAAGEP

Sequences:

>Translated_914_residues
MMPSQITRSSHSSLPEVAPASGDAAGVSEQTPQQARTVAFFASGELAVAFGRTSTAPAQDSVRLLSALQRELDKQQPSWP
TVAQLCHSLAEVAKTEQGWHQLASEDQAPAPALKDLLERCIGRLADMPASHASHDSLSLACEGLRTARLHQSVARLTARP
PALARAIPDLLALTHLDPETLGAEPPVVSSYTLFSHFVHTAKQRTAELNDSLQRQPEAVVSLLRSHADTLNDLETLPGAL
QALTENCQDAPACNELRELAEVVGALLQLLREHGILPRLEAISIEPGEAPAPGHEAAEPRLTRSQALLKAGGNLVRKFDA
YGALAPMDDKGLLALMRTPAPHLSPDQMHAFLNKHVLHLTQEQRDIVSNTPLPFAPEGDIEARCGMGFDEKLRLALANGS
LVLSEEQLARLGHLPSAATTTSDVVKTLLEKPSSALSEAERDMLGAIVQANGQGQLDAWRAHNEQLPAVLSRSGLPSDVK
DELLSLNQSMNAELGTLKNGASFKSRILASPAMLLALAPLPLAVAFVSKDNSYSSSLVAHFTKNAVFMAGLMMNELTNAR
TNVDHGLNRYFVTVLANAIVAQPTFARNEHLLEQVGFGIATAVASGAATLGVFNRESIVAAFKLAKSKLSRQDTGNASIP
EEDHLAVVRHFDVSEHFAQQMKVATELYKQDKSITDIMNSSLTYLGTKSSEFQARFESVDALRAGLQLAEGERKADPDFY
TKLGLVALTASIGAALVMLMKSMVGKADYAADGVWCVSEMLKLAMNPEVDMQKAVQVFKEIVGLNLVMTGFLGVNKVWNF
LDKGIKGYASGAAVLTAANLTLPGMVGEVAGAAAGKGLSYLTDKGKAAHQAGRAAASWAGNYVGTSRLGSAVGTLQTAIP
GRIAGGQVVAGLYDRFRYLTGSHPTPAQQAAGEP
>Mature_914_residues
MMPSQITRSSHSSLPEVAPASGDAAGVSEQTPQQARTVAFFASGELAVAFGRTSTAPAQDSVRLLSALQRELDKQQPSWP
TVAQLCHSLAEVAKTEQGWHQLASEDQAPAPALKDLLERCIGRLADMPASHASHDSLSLACEGLRTARLHQSVARLTARP
PALARAIPDLLALTHLDPETLGAEPPVVSSYTLFSHFVHTAKQRTAELNDSLQRQPEAVVSLLRSHADTLNDLETLPGAL
QALTENCQDAPACNELRELAEVVGALLQLLREHGILPRLEAISIEPGEAPAPGHEAAEPRLTRSQALLKAGGNLVRKFDA
YGALAPMDDKGLLALMRTPAPHLSPDQMHAFLNKHVLHLTQEQRDIVSNTPLPFAPEGDIEARCGMGFDEKLRLALANGS
LVLSEEQLARLGHLPSAATTTSDVVKTLLEKPSSALSEAERDMLGAIVQANGQGQLDAWRAHNEQLPAVLSRSGLPSDVK
DELLSLNQSMNAELGTLKNGASFKSRILASPAMLLALAPLPLAVAFVSKDNSYSSSLVAHFTKNAVFMAGLMMNELTNAR
TNVDHGLNRYFVTVLANAIVAQPTFARNEHLLEQVGFGIATAVASGAATLGVFNRESIVAAFKLAKSKLSRQDTGNASIP
EEDHLAVVRHFDVSEHFAQQMKVATELYKQDKSITDIMNSSLTYLGTKSSEFQARFESVDALRAGLQLAEGERKADPDFY
TKLGLVALTASIGAALVMLMKSMVGKADYAADGVWCVSEMLKLAMNPEVDMQKAVQVFKEIVGLNLVMTGFLGVNKVWNF
LDKGIKGYASGAAVLTAANLTLPGMVGEVAGAAAGKGLSYLTDKGKAAHQAGRAAASWAGNYVGTSRLGSAVGTLQTAIP
GRIAGGQVVAGLYDRFRYLTGSHPTPAQQAAGEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Note=Secreted via type III secretion system (TTSS) (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hopW family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HOAE1_PSEU2 (Q7PC62)

Other databases:

- EMBL:   BK000956
- EMBL:   CP000075
- RefSeq:   YP_237337.1
- GeneID:   3369809
- GenomeReviews:   CP000075_GR
- KEGG:   psb:Psyr_4269
- NMPDR:   fig|205918.4.peg.4704
- HOGENOM:   HBG192929
- OMA:   NELTNAR
- ProtClustDB:   CLSK749717
- BioCyc:   PSYR205918:PSYR_4269-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 97212; Mature: 97212

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPSQITRSSHSSLPEVAPASGDAAGVSEQTPQQARTVAFFASGELAVAFGRTSTAPAQD
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCCHH
SVRLLSALQRELDKQQPSWPTVAQLCHSLAEVAKTEQGWHQLASEDQAPAPALKDLLERC
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IGRLADMPASHASHDSLSLACEGLRTARLHQSVARLTARPPALARAIPDLLALTHLDPET
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
LGAEPPVVSSYTLFSHFVHTAKQRTAELNDSLQRQPEAVVSLLRSHADTLNDLETLPGAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
QALTENCQDAPACNELRELAEVVGALLQLLREHGILPRLEAISIEPGEAPAPGHEAAEPR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCH
LTRSQALLKAGGNLVRKFDAYGALAPMDDKGLLALMRTPAPHLSPDQMHAFLNKHVLHLT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
QEQRDIVSNTPLPFAPEGDIEARCGMGFDEKLRLALANGSLVLSEEQLARLGHLPSAATT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCEEECHHHHHHHCCCCCCCCC
TSDVVKTLLEKPSSALSEAERDMLGAIVQANGQGQLDAWRAHNEQLPAVLSRSGLPSDVK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCHHH
DELLSLNQSMNAELGTLKNGASFKSRILASPAMLLALAPLPLAVAFVSKDNSYSSSLVAH
HHHHHHHHHCCCCHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCHHHHHHHH
FTKNAVFMAGLMMNELTNARTNVDHGLNRYFVTVLANAIVAQPTFARNEHLLEQVGFGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
TAVASGAATLGVFNRESIVAAFKLAKSKLSRQDTGNASIPEEDHLAVVRHFDVSEHFAQQ
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHH
MKVATELYKQDKSITDIMNSSLTYLGTKSSEFQARFESVDALRAGLQLAEGERKADPDFY
HHHHHHHHHCCCHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
TKLGLVALTASIGAALVMLMKSMVGKADYAADGVWCVSEMLKLAMNPEVDMQKAVQVFKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IVGLNLVMTGFLGVNKVWNFLDKGIKGYASGAAVLTAANLTLPGMVGEVAGAAAGKGLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHHHCCCCHH
LTDKGKAAHQAGRAAASWAGNYVGTSRLGSAVGTLQTAIPGRIAGGQVVAGLYDRFRYLT
HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GSHPTPAQQAAGEP
CCCCCCHHHCCCCC
>Mature Secondary Structure
MMPSQITRSSHSSLPEVAPASGDAAGVSEQTPQQARTVAFFASGELAVAFGRTSTAPAQD
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCCHH
SVRLLSALQRELDKQQPSWPTVAQLCHSLAEVAKTEQGWHQLASEDQAPAPALKDLLERC
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IGRLADMPASHASHDSLSLACEGLRTARLHQSVARLTARPPALARAIPDLLALTHLDPET
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
LGAEPPVVSSYTLFSHFVHTAKQRTAELNDSLQRQPEAVVSLLRSHADTLNDLETLPGAL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
QALTENCQDAPACNELRELAEVVGALLQLLREHGILPRLEAISIEPGEAPAPGHEAAEPR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCH
LTRSQALLKAGGNLVRKFDAYGALAPMDDKGLLALMRTPAPHLSPDQMHAFLNKHVLHLT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH
QEQRDIVSNTPLPFAPEGDIEARCGMGFDEKLRLALANGSLVLSEEQLARLGHLPSAATT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCEEECHHHHHHHCCCCCCCCC
TSDVVKTLLEKPSSALSEAERDMLGAIVQANGQGQLDAWRAHNEQLPAVLSRSGLPSDVK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCHHH
DELLSLNQSMNAELGTLKNGASFKSRILASPAMLLALAPLPLAVAFVSKDNSYSSSLVAH
HHHHHHHHHCCCCHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCCHHHHHHHH
FTKNAVFMAGLMMNELTNARTNVDHGLNRYFVTVLANAIVAQPTFARNEHLLEQVGFGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
TAVASGAATLGVFNRESIVAAFKLAKSKLSRQDTGNASIPEEDHLAVVRHFDVSEHFAQQ
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHH
MKVATELYKQDKSITDIMNSSLTYLGTKSSEFQARFESVDALRAGLQLAEGERKADPDFY
HHHHHHHHHCCCHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
TKLGLVALTASIGAALVMLMKSMVGKADYAADGVWCVSEMLKLAMNPEVDMQKAVQVFKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IVGLNLVMTGFLGVNKVWNFLDKGIKGYASGAAVLTAANLTLPGMVGEVAGAAAGKGLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHHHCCCCHH
LTDKGKAAHQAGRAAASWAGNYVGTSRLGSAVGTLQTAIPGRIAGGQVVAGLYDRFRYLT
HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GSHPTPAQQAAGEP
CCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12615215