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The map label for this gene is opuBB [H]

Identifier: 66047479

GI number: 66047479

Start: 5069295

End: 5070008

Strand: Reverse

Name: opuBB [H]

Synonym: Psyr_4252

Alternate gene names: 66047479

Gene position: 5070008-5069295 (Counterclockwise)

Preceding gene: 66047482

Following gene: 66047478

Centisome position: 83.2

GC content: 60.5

Gene sequence:

>714_bases
GTGGCAAATCGCTATGGCAAGGGGCTATTGGGAGGTGCGGTTACGATCGCACTCCTGGCCCTGCTGATCCACTGGATCGG
CATCAGTACTATCAAGCAATACCAGGATGACCTGCTGTTCTACCTTCAGGCTCACCTGATTCTGGTTCTGGTTTCGATGT
TGGCGGCCCTGGTGGTCGGCATCCCTGCAGGCATTGCCCTCAGCCGACCAAGCATGGTTGGCCGCGCCGAACGCTTCATG
CAGATATTCAACATTGGCAACACCGTTCCTCCTCTCGCCGTTCTGGCCATTGCCCTCGGGATTCTCGGGATCGGCAGCGG
GCCGGCGATCTTCGCGCTGTTCCTCGCCTCTCTGTTGCCTATCGTGCGTAACACCTACGAGGGCCTGAAAAACGTCCAGG
GTTCACTCAAGGAAGCTGCCGTCGGTATCGGCATGACCCCGCGCCAGGTGCTGTGGCGTGTCGAGTTGCCCAATGCCGTA
CCGATCATTATCGGCGGTGTGCGTGTCGCGCTGGCGATCAATGTCGGGACCGCGCCGCTGGCGTTTCTCATCGGTGCCAA
CAGCCTTGGCAGCCTGATTTTCCCGGGCATTGCCTTGAACAACCAGCCGCAACTGGTGCTGGGTGCGGCGTGTACCGCTC
TGCTGGCGCTGCTGCTCGATGGTCTGGTGACACTGGCCAGTCGTCTTTGGCTGGAACGCGGACTGGCTCGCTGA

Upstream 100 bases:

>100_bases
TACCGGCGACCCACCCGCTGCTCTTCGCGAACGTTATTGCCGGCGTCCTTTCCGGACGTCCAGGTCAACGCGTTCGCCGA
CTGAAATAAGGAGTCCGCCT

Downstream 100 bases:

>100_bases
GCGAAGGAATCCTCATGAAAAGAATATGCTTGTTTTTAGGCTTTGCCTTGCTGTTTCCGGCATTGGCCCAGGCTGCGGAA
AAGCCGCTGTTACGTGTCGG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MANRYGKGLLGGAVTIALLALLIHWIGISTIKQYQDDLLFYLQAHLILVLVSMLAALVVGIPAGIALSRPSMVGRAERFM
QIFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLPIVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWRVELPNAV
PIIIGGVRVALAINVGTAPLAFLIGANSLGSLIFPGIALNNQPQLVLGAACTALLALLLDGLVTLASRLWLERGLAR

Sequences:

>Translated_237_residues
MANRYGKGLLGGAVTIALLALLIHWIGISTIKQYQDDLLFYLQAHLILVLVSMLAALVVGIPAGIALSRPSMVGRAERFM
QIFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLPIVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWRVELPNAV
PIIIGGVRVALAINVGTAPLAFLIGANSLGSLIFPGIALNNQPQLVLGAACTALLALLLDGLVTLASRLWLERGLAR
>Mature_236_residues
ANRYGKGLLGGAVTIALLALLIHWIGISTIKQYQDDLLFYLQAHLILVLVSMLAALVVGIPAGIALSRPSMVGRAERFMQ
IFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLPIVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWRVELPNAVP
IIIGGVRVALAINVGTAPLAFLIGANSLGSLIFPGIALNNQPQLVLGAACTALLALLLDGLVTLASRLWLERGLAR

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=219, Percent_Identity=39.2694063926941, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788451, Length=217, Percent_Identity=35.0230414746544, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789033, Length=183, Percent_Identity=30.6010928961749, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786564, Length=156, Percent_Identity=33.974358974359, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24791; Mature: 24660

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRYGKGLLGGAVTIALLALLIHWIGISTIKQYQDDLLFYLQAHLILVLVSMLAALVVG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAGIALSRPSMVGRAERFMQIFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWRVELPNAVPIIIGGVRVALAINVGTAPL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCCCCCEEEECCEEEEEEEECCCHHH
AFLIGANSLGSLIFPGIALNNQPQLVLGAACTALLALLLDGLVTLASRLWLERGLAR
HHHHCCCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ANRYGKGLLGGAVTIALLALLIHWIGISTIKQYQDDLLFYLQAHLILVLVSMLAALVVG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAGIALSRPSMVGRAERFMQIFNIGNTVPPLAVLAIALGILGIGSGPAIFALFLASLLP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLWRVELPNAVPIIIGGVRVALAINVGTAPL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCCCCCEEEECCEEEEEEEECCCHHH
AFLIGANSLGSLIFPGIALNNQPQLVLGAACTALLALLLDGLVTLASRLWLERGLAR
HHHHCCCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]