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The map label for this gene is yagE [C]

Identifier: 66047454

GI number: 66047454

Start: 5034437

End: 5035348

Strand: Reverse

Name: yagE [C]

Synonym: Psyr_4227

Alternate gene names: 66047454

Gene position: 5035348-5034437 (Counterclockwise)

Preceding gene: 66047455

Following gene: 66047453

Centisome position: 82.63

GC content: 60.42

Gene sequence:

>912_bases
ATGAATCCACAAGAACTGAAGTCCATCCTCTCTTCCGGTCTGCTGTCTTTCCCGGTTACCGATTTCAATGCCCAGGGCGA
TTTTCATCGCGCTGGCTACATCAAACGCCTCGAGTGGCTGGCTCCGTATGGCGCAAGCGCTCTGTTCGCCGCCGGCGGCA
CGGGTGAGTTTTTCTCCCTGGCTGCCAGCGAATATTCCGAAATCATCAAGACTGCCGTCGACACTTGCGCCACCAGCGTG
CCAATCCTCGCCGGTGTAGGCGGTGCGACCCGTCAGGCCATCGAGTACGCTCAGGAAGCCGAGCGTCTGGGCGCCAAGGG
CTTGCTGCTGCTGCCGCACTACCTGACCGAAGCCAGCCAGGACGGTGTTGCCGCTCACGTCGAAGCCGTGTGCAAATCGG
TGAAGATCGGTGTGGTGGTCTACAACCGTAACGTCTGCCGCCTGACGCCAACCCTGCTGGAACAACTGGCCGAGCGTTGC
CCTAACCTGATCGGTTACAAGGATGGCCTGGGTGATATCGAGCTGATGGTTTCGATCCGCCGCCGTCTCGGTGACCGTTT
CTCGTACCTGGGCGGCCTGCCGACCGCTGAAGTCTATGCCGCTGCCTACAAGGCGCTGGGCGTGCCGGTCTACTCGTCCG
CAGTGTTCAACTTCGTACCGAAACTGGCGATGGACTTCTACCACGCCATCGCCCGCGACGATCATCAGGCGGTCGGCAAG
TACATCGACGATTTCTTCCTGCCTTACCTGGAAATCCGCAACCGCAAGGCCGGTTATGCCGTGAGCATCGTCAAGGCCGG
CGCGAAGATCGCCGGTTATGACGCAGGTCCGGTGCGCGCACCGTTGACCGATCTGACGTCAGACGAGTGCGACATGCTCG
CTGCACTGATGGACAAGCAGGGCAAGCAGTAA

Upstream 100 bases:

>100_bases
TCCCTGTTGAGTGATTTTATTATCAGTTGTACGATGACTTACGACATCGGCGCTGACCCGGTGATCCTCTAACAATTATG
TCCTCCAGGGTGTTCGAATA

Downstream 100 bases:

>100_bases
CACCTGCCACGACAAAGCCGCTGAGCGATCAGCGGTTTTTTCGTTGCAAGGCATGACCCTTACAGGTGGCAGATGTCGTC
GCCGTGACGCTGCCAAGGGG

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSLAASEYSEIIKTAVDTCATSV
PILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQDGVAAHVEAVCKSVKIGVVVYNRNVCRLTPTLLEQLAERC
PNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFVPKLAMDFYHAIARDDHQAVGK
YIDDFFLPYLEIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTSDECDMLAALMDKQGKQ

Sequences:

>Translated_303_residues
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSLAASEYSEIIKTAVDTCATSV
PILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQDGVAAHVEAVCKSVKIGVVVYNRNVCRLTPTLLEQLAERC
PNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFVPKLAMDFYHAIARDDHQAVGK
YIDDFFLPYLEIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTSDECDMLAALMDKQGKQ
>Mature_303_residues
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSLAASEYSEIIKTAVDTCATSV
PILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQDGVAAHVEAVCKSVKIGVVVYNRNVCRLTPTLLEQLAERC
PNLIGYKDGLGDIELMVSIRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFVPKLAMDFYHAIARDDHQAVGK
YIDDFFLPYLEIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTSDECDMLAALMDKQGKQ

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1786463, Length=227, Percent_Identity=29.0748898678414, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788823, Length=178, Percent_Identity=29.2134831460674, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082415, Length=301, Percent_Identity=23.9202657807309, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.41 [H]

Molecular weight: Translated: 32702; Mature: 32702

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHH
AASEYSEIIKTAVDTCATSVPILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQ
HHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCC
DGVAAHVEAVCKSVKIGVVVYNRNVCRLTPTLLEQLAERCPNLIGYKDGLGDIELMVSIR
CCHHHHHHHHHHHHEEEEEEEECCCEEECHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHH
RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFVPKLAMDFYHAIARDDHQAVGK
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YIDDFFLPYLEIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTSDECDMLAALMDKQ
HHHHHHHHHHHHCCCCCCCEEHHHHCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHHHHC
GKQ
CCC
>Mature Secondary Structure
MNPQELKSILSSGLLSFPVTDFNAQGDFHRAGYIKRLEWLAPYGASALFAAGGTGEFFSL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHH
AASEYSEIIKTAVDTCATSVPILAGVGGATRQAIEYAQEAERLGAKGLLLLPHYLTEASQ
HHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCC
DGVAAHVEAVCKSVKIGVVVYNRNVCRLTPTLLEQLAERCPNLIGYKDGLGDIELMVSIR
CCHHHHHHHHHHHHEEEEEEEECCCEEECHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHH
RRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFVPKLAMDFYHAIARDDHQAVGK
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YIDDFFLPYLEIRNRKAGYAVSIVKAGAKIAGYDAGPVRAPLTDLTSDECDMLAALMDKQ
HHHHHHHHHHHHCCCCCCCEEHHHHCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHHHHC
GKQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]