| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is gudP [H]
Identifier: 66047453
GI number: 66047453
Start: 5032887
End: 5034272
Strand: Reverse
Name: gudP [H]
Synonym: Psyr_4226
Alternate gene names: 66047453
Gene position: 5034272-5032887 (Counterclockwise)
Preceding gene: 66047454
Following gene: 66047452
Centisome position: 82.61
GC content: 59.02
Gene sequence:
>1386_bases ATGCAAAAGTCCAAGCCGACGCATGTCCGCTATTTGATCCTGTTGATGCTGTTTCTGGTCACCACGATCAACTACGCCGA CCGCGCCACCATCGCTATCGCTGGTTCCAGCATTCAGAAAGACCTGGGCATCAGTGCCGTCACGCTGGGCTATATCTTCT CCGCATTCGGCTGGGCCTACGTGGCCGGTCAGATTCCCGGTGGCTGGCTGCTCGACCGATTCGGGTCGAAGAAAGTCTAC GCCATGAGCATTTTCACCTGGTCGCTGTTCACTCTGCTGCAAGGCTATGTGGGCGAGTTCGGTGTCTCCACGGCCATCGT TGCGCTGTTCATGCTGCGCTTTCTGGTCGGTCTGGCCGAAGCGCCGTCCTTTCCAGGTAACGCGCGCATTGTCGCCGCCT GGTTTCCGACCGCCGAACGCGGTACCGCCTCGGCGATCTTCAACTCGGCGCAATACTTCGCCACCGTGCTGTTCGCTCCG CTGATGGGCTGGATCGTCTACACCTACGGCTGGCAGCACGTGTTCGTCGTGATGGGCGCGTTCGGTATCGTGTTCTCCAT GATCTGGATGAAGGTCATCTACGGCCCGCGCAACCACCCCATGATCAACGAGGCCGAACTGGAGCACATTTCCAGCAATG GCGCGCTGGTCGATCTGGATCAGGACAAGGGTAAAGGCGCGCAAAAAACAGCCAGTAGCGGCCCCAAGTGGGATTACATC CGTCAGTTGCTGACCAACCGTATGATGCTGGGTATCTACCTCAGCCAGTACTGCATCAACGGCATCACCTACTTCTTCCT GACCTGGTTCCCGGTGTACCTGGTTCAGGAGCGCGGCATGACCATCCTCAAGGCCGGCATCATCGCGTCTCTGCCAGCGA TCTGCGGCTTCATCGGCGGTGTGTTGGGTGGGATCATTTCCGACTACCTGCTGCGCAAGGGCCATTCGCTGACCTTTGCG CGCAAGGCGCCGATCATCGGCGGCCTGCTGCTGTCGACCTCGATCGTGACCTGCAACTACGTCGACATCGAATGGGTGGT CGTGGGCTTCATGGCCCTGGCATTCTTCGGCAAGGGCGTGGGCGCGCTGGGCTGGGCTGTGATGTCCGACGTGTCGCCCA AGCAGATCGCCGGTTTGAGCGGCGGCCTGTTCAACACCTTCGGTAACATTGCATCGATCACCACCCCGATCGTGATTGGC TACATCATCAGCAGCACCGGCTCGTTCAAATGGGCGCTGGTGTTCGTGGGCGCCAACGCGCTGCTGGCGGTGATCAGTTA CATTTTCATCGTGGGTGAAATCAAGCGTGTGGAATTGAAAGAGCCGCCTGCCAAGGGGCCATTGCTGAACGACTCGGTCA GCGACCTTTCCGAAGCAAAATCCTGA
Upstream 100 bases:
>100_bases GGTGGCAGATGTCGTCGCCGTGACGCTGCCAAGGGGCCTGTAACGCTACACCCAAAAACAGCTTTACCCGCGTAAAAAAA TAATCAGTGGGAGCTCTACC
Downstream 100 bases:
>100_bases GGAAACCGTGATGAACCTGATTCAACATGCCGATTCGCCACGCTATATCCGGCTGCATCCGCTGGATAACGTCGTGGTCG TGGTCAACGACCAGGGTGTG
Product: D-galactonate transporter
Products: NA
Alternate protein names: D-glucarate permease [H]
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MQKSKPTHVRYLILLMLFLVTTINYADRATIAIAGSSIQKDLGISAVTLGYIFSAFGWAYVAGQIPGGWLLDRFGSKKVY AMSIFTWSLFTLLQGYVGEFGVSTAIVALFMLRFLVGLAEAPSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAP LMGWIVYTYGWQHVFVVMGAFGIVFSMIWMKVIYGPRNHPMINEAELEHISSNGALVDLDQDKGKGAQKTASSGPKWDYI RQLLTNRMMLGIYLSQYCINGITYFFLTWFPVYLVQERGMTILKAGIIASLPAICGFIGGVLGGIISDYLLRKGHSLTFA RKAPIIGGLLLSTSIVTCNYVDIEWVVVGFMALAFFGKGVGALGWAVMSDVSPKQIAGLSGGLFNTFGNIASITTPIVIG YIISSTGSFKWALVFVGANALLAVISYIFIVGEIKRVELKEPPAKGPLLNDSVSDLSEAKS
Sequences:
>Translated_461_residues MQKSKPTHVRYLILLMLFLVTTINYADRATIAIAGSSIQKDLGISAVTLGYIFSAFGWAYVAGQIPGGWLLDRFGSKKVY AMSIFTWSLFTLLQGYVGEFGVSTAIVALFMLRFLVGLAEAPSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAP LMGWIVYTYGWQHVFVVMGAFGIVFSMIWMKVIYGPRNHPMINEAELEHISSNGALVDLDQDKGKGAQKTASSGPKWDYI RQLLTNRMMLGIYLSQYCINGITYFFLTWFPVYLVQERGMTILKAGIIASLPAICGFIGGVLGGIISDYLLRKGHSLTFA RKAPIIGGLLLSTSIVTCNYVDIEWVVVGFMALAFFGKGVGALGWAVMSDVSPKQIAGLSGGLFNTFGNIASITTPIVIG YIISSTGSFKWALVFVGANALLAVISYIFIVGEIKRVELKEPPAKGPLLNDSVSDLSEAKS >Mature_461_residues MQKSKPTHVRYLILLMLFLVTTINYADRATIAIAGSSIQKDLGISAVTLGYIFSAFGWAYVAGQIPGGWLLDRFGSKKVY AMSIFTWSLFTLLQGYVGEFGVSTAIVALFMLRFLVGLAEAPSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAP LMGWIVYTYGWQHVFVVMGAFGIVFSMIWMKVIYGPRNHPMINEAELEHISSNGALVDLDQDKGKGAQKTASSGPKWDYI RQLLTNRMMLGIYLSQYCINGITYFFLTWFPVYLVQERGMTILKAGIIASLPAICGFIGGVLGGIISDYLLRKGHSLTFA RKAPIIGGLLLSTSIVTCNYVDIEWVVVGFMALAFFGKGVGALGWAVMSDVSPKQIAGLSGGLFNTFGNIASITTPIVIG YIISSTGSFKWALVFVGANALLAVISYIFIVGEIKRVELKEPPAKGPLLNDSVSDLSEAKS
Specific function: Uptake of D-glucarate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI9945322, Length=429, Percent_Identity=27.039627039627, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI9966811, Length=403, Percent_Identity=26.5508684863524, Blast_Score=132, Evalue=9e-31, Organism=Homo sapiens, GI148743791, Length=397, Percent_Identity=29.2191435768262, Blast_Score=125, Evalue=8e-29, Organism=Homo sapiens, GI21322234, Length=431, Percent_Identity=25.754060324826, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI6912666, Length=425, Percent_Identity=25.4117647058824, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI4885441, Length=382, Percent_Identity=27.2251308900524, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI5031955, Length=271, Percent_Identity=29.1512915129151, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI148728191, Length=333, Percent_Identity=28.5285285285285, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI154350196, Length=431, Percent_Identity=24.3619489559165, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI223718438, Length=223, Percent_Identity=28.2511210762332, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI256219598, Length=449, Percent_Identity=21.1581291759465, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI4503847, Length=449, Percent_Identity=21.1581291759465, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI256219483, Length=449, Percent_Identity=21.1581291759465, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI256219543, Length=308, Percent_Identity=23.0519480519481, Blast_Score=70, Evalue=5e-12, Organism=Escherichia coli, GI1789152, Length=440, Percent_Identity=65.2272727272727, Blast_Score=601, Evalue=1e-173, Organism=Escherichia coli, GI1789515, Length=440, Percent_Identity=61.5909090909091, Blast_Score=587, Evalue=1e-169, Organism=Escherichia coli, GI87082320, Length=437, Percent_Identity=43.2494279176201, Blast_Score=372, Evalue=1e-104, Organism=Escherichia coli, GI2367379, Length=444, Percent_Identity=27.4774774774775, Blast_Score=184, Evalue=8e-48, Organism=Escherichia coli, GI2367193, Length=413, Percent_Identity=25.90799031477, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1788573, Length=452, Percent_Identity=22.787610619469, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533554, Length=440, Percent_Identity=26.1363636363636, Blast_Score=118, Evalue=6e-27, Organism=Caenorhabditis elegans, GI115533556, Length=440, Percent_Identity=26.1363636363636, Blast_Score=118, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17552542, Length=444, Percent_Identity=24.5495495495495, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17535049, Length=424, Percent_Identity=21.6981132075472, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560030, Length=425, Percent_Identity=23.7647058823529, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17554148, Length=401, Percent_Identity=23.9401496259352, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71991448, Length=386, Percent_Identity=23.8341968911917, Blast_Score=83, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71991453, Length=386, Percent_Identity=23.8341968911917, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI32565914, Length=425, Percent_Identity=23.7647058823529, Blast_Score=82, Evalue=8e-16, Organism=Caenorhabditis elegans, GI193205400, Length=382, Percent_Identity=23.2984293193717, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71989129, Length=385, Percent_Identity=23.6363636363636, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI25141341, Length=411, Percent_Identity=24.5742092457421, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17554962, Length=467, Percent_Identity=22.2698072805139, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25141316, Length=382, Percent_Identity=23.8219895287958, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25141318, Length=382, Percent_Identity=23.8219895287958, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71997452, Length=381, Percent_Identity=24.4094488188976, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17569727, Length=425, Percent_Identity=22.3529411764706, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25145964, Length=372, Percent_Identity=22.3118279569892, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17509575, Length=501, Percent_Identity=21.7564870259481, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI32565916, Length=267, Percent_Identity=23.5955056179775, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17570335, Length=371, Percent_Identity=21.832884097035, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17563054, Length=459, Percent_Identity=22.4400871459695, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25151055, Length=248, Percent_Identity=22.9838709677419, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17537329, Length=279, Percent_Identity=25.089605734767, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641682, Length=425, Percent_Identity=28.2352941176471, Blast_Score=132, Evalue=5e-31, Organism=Drosophila melanogaster, GI24583789, Length=440, Percent_Identity=27.5, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24648416, Length=462, Percent_Identity=24.8917748917749, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI21356189, Length=462, Percent_Identity=24.8917748917749, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI45550460, Length=430, Percent_Identity=26.2790697674419, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI62484226, Length=462, Percent_Identity=26.1904761904762, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI24655271, Length=462, Percent_Identity=25.974025974026, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24655255, Length=382, Percent_Identity=27.7486910994764, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI20130135, Length=462, Percent_Identity=25.974025974026, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28573708, Length=472, Percent_Identity=25.4237288135593, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI28573707, Length=472, Percent_Identity=25.4237288135593, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI24639764, Length=440, Percent_Identity=25, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24584153, Length=435, Percent_Identity=25.0574712643678, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24654215, Length=502, Percent_Identity=23.9043824701195, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI19922400, Length=495, Percent_Identity=24.2424242424242, Blast_Score=98, Evalue=9e-21, Organism=Drosophila melanogaster, GI24658658, Length=480, Percent_Identity=24.5833333333333, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI20130167, Length=415, Percent_Identity=24.3373493975904, Blast_Score=92, Evalue=9e-19, Organism=Drosophila melanogaster, GI24580790, Length=422, Percent_Identity=24.6445497630332, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI28573299, Length=482, Percent_Identity=24.4813278008299, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI20129235, Length=427, Percent_Identity=25.2927400468384, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI45550364, Length=446, Percent_Identity=24.8878923766816, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI24658696, Length=460, Percent_Identity=24.3478260869565, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI19920686, Length=436, Percent_Identity=22.7064220183486, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI221474708, Length=200, Percent_Identity=26.5, Blast_Score=76, Evalue=6e-14, Organism=Drosophila melanogaster, GI24658666, Length=477, Percent_Identity=22.8511530398323, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24658674, Length=451, Percent_Identity=23.059866962306, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24653727, Length=389, Percent_Identity=25.1928020565553, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI45550495, Length=452, Percent_Identity=23.2300884955752, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24651789, Length=424, Percent_Identity=25.7075471698113, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24651787, Length=424, Percent_Identity=25.7075471698113, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 50060; Mature: 50060
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKSKPTHVRYLILLMLFLVTTINYADRATIAIAGSSIQKDLGISAVTLGYIFSAFGWAY CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHH VAGQIPGGWLLDRFGSKKVYAMSIFTWSLFTLLQGYVGEFGVSTAIVALFMLRFLVGLAE HCCCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAPLMGWIVYTYGWQHVFVVMGA CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGIVFSMIWMKVIYGPRNHPMINEAELEHISSNGALVDLDQDKGKGAQKTASSGPKWDYI HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCHHHH RQLLTNRMMLGIYLSQYCINGITYFFLTWFPVYLVQERGMTILKAGIIASLPAICGFIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VLGGIISDYLLRKGHSLTFARKAPIIGGLLLSTSIVTCNYVDIEWVVVGFMALAFFGKGV HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCH GALGWAVMSDVSPKQIAGLSGGLFNTFGNIASITTPIVIGYIISSTGSFKWALVFVGANA HHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHH LLAVISYIFIVGEIKRVELKEPPAKGPLLNDSVSDLSEAKS HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure MQKSKPTHVRYLILLMLFLVTTINYADRATIAIAGSSIQKDLGISAVTLGYIFSAFGWAY CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHH VAGQIPGGWLLDRFGSKKVYAMSIFTWSLFTLLQGYVGEFGVSTAIVALFMLRFLVGLAE HCCCCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAPLMGWIVYTYGWQHVFVVMGA CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGIVFSMIWMKVIYGPRNHPMINEAELEHISSNGALVDLDQDKGKGAQKTASSGPKWDYI HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCHHHH RQLLTNRMMLGIYLSQYCINGITYFFLTWFPVYLVQERGMTILKAGIIASLPAICGFIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VLGGIISDYLLRKGHSLTFARKAPIIGGLLLSTSIVTCNYVDIEWVVVGFMALAFFGKGV HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCH GALGWAVMSDVSPKQIAGLSGGLFNTFGNIASITTPIVIGYIISSTGSFKWALVFVGANA HHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHH LLAVISYIFIVGEIKRVELKEPPAKGPLLNDSVSDLSEAKS HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7704254; 9384377 [H]