| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is oppD [H]
Identifier: 66047440
GI number: 66047440
Start: 5018532
End: 5019524
Strand: Reverse
Name: oppD [H]
Synonym: Psyr_4213
Alternate gene names: 66047440
Gene position: 5019524-5018532 (Counterclockwise)
Preceding gene: 66047441
Following gene: 66047439
Centisome position: 82.37
GC content: 64.55
Gene sequence:
>993_bases ATGAGTACGCCCGTGCTGCAGGTCAGCGAGATGAGCGTGGTGGCGAGCCATCGTGGCCGCGAAGTGACGCTGGTCGACCG GTTGTCGTTCGACCTGCACCAGGGCGAGATTCTCGGGCTGGTCGGTGAAAGCGGCTCTGGCAAGACCATGGCCTGCCGGG CGCTGATGCAGTTGATGCCGTCGCCGGATCTGCACGTGCGTGGCGGCTCGGTACACCTCAACGATGTCGATCTGTTGAAG CTGGATGCCGCTGGAATGCGTGCCATGCGCGGACGGCGGATCGGCATGATTTTCCAGAACCCCAGTAGCCACCTCGACCC GCTGATGCGTATCGGCGAGCAGATCGCCGAAGGTGTTCGTCTGCATCAGGGCGCATCGAAGCGTGAAGCCCGGGCGCAGG CGATCGATCTTTTGCGCCAGGTCGGTATTCCCGATCCGGCGTCCCGTGTGGATAACTTCCCCCATGAGTTTTCCGGTGGC ATGCGCCAGCGCGCGATGATTGCCGTGGCACTGGGCTGTGGGCCGCAGGTCCTGATTGCCGACGAGCCGACGACTGCGCT GGATGTGACGGTGCAGGCGCAAATCCTGCGTCTGTTGCTGGACCTGCGCGATCGTCACGGGCTGTCGTTGATCATGATCA CCCACGATCTCGGCGTGGTGGCGCAAACCTGCGACTCGATTGCGGTGATGTACGCCGGTCGCCTGTGTGAGCACGGCAGC AAGCGCGATGTGCTCGCCCGCGCACGTCATCCTTACACCCACGGTCTGATCGAATGCCAGCCCGCCAGCAGCGCGGGCAG CGAACTGCTACGGACCATTCCCGGCCAGCCGCCCTTGCTCGACGCACTGCCCGGCGGCTGCCGTTTCCATGCCCGCTGCA GTCATGCAGGAGCAGACTGTCCTGACAGGCTACCGCTGATGCGGCCGATGGGCGTTGCCCATGCGGCGGCCTGTCACTAC CCGTTGGTGCAATCGCGGGAGGCCGTCTCATGA
Upstream 100 bases:
>100_bases CGTGGTGGATCTGCACCTTTCCGGGCCTGGCCATCGTGACGTTGGCTATGGGCTTCAGCCTGTTGGCGGACGGCGTCGCC GAAACCCTGGGAGAACGGCA
Downstream 100 bases:
>100_bases GCGGCCCAATACTGCTGAACGTCAATGATCTGGTGGTGCGCTTCCCGGCACCCGGCTCGGGTTTCATGGGCCTCAACAAG CGTTGGGTGCATGCCGTCAA
Product: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MSTPVLQVSEMSVVASHRGREVTLVDRLSFDLHQGEILGLVGESGSGKTMACRALMQLMPSPDLHVRGGSVHLNDVDLLK LDAAGMRAMRGRRIGMIFQNPSSHLDPLMRIGEQIAEGVRLHQGASKREARAQAIDLLRQVGIPDPASRVDNFPHEFSGG MRQRAMIAVALGCGPQVLIADEPTTALDVTVQAQILRLLLDLRDRHGLSLIMITHDLGVVAQTCDSIAVMYAGRLCEHGS KRDVLARARHPYTHGLIECQPASSAGSELLRTIPGQPPLLDALPGGCRFHARCSHAGADCPDRLPLMRPMGVAHAAACHY PLVQSREAVS
Sequences:
>Translated_330_residues MSTPVLQVSEMSVVASHRGREVTLVDRLSFDLHQGEILGLVGESGSGKTMACRALMQLMPSPDLHVRGGSVHLNDVDLLK LDAAGMRAMRGRRIGMIFQNPSSHLDPLMRIGEQIAEGVRLHQGASKREARAQAIDLLRQVGIPDPASRVDNFPHEFSGG MRQRAMIAVALGCGPQVLIADEPTTALDVTVQAQILRLLLDLRDRHGLSLIMITHDLGVVAQTCDSIAVMYAGRLCEHGS KRDVLARARHPYTHGLIECQPASSAGSELLRTIPGQPPLLDALPGGCRFHARCSHAGADCPDRLPLMRPMGVAHAAACHY PLVQSREAVS >Mature_329_residues STPVLQVSEMSVVASHRGREVTLVDRLSFDLHQGEILGLVGESGSGKTMACRALMQLMPSPDLHVRGGSVHLNDVDLLKL DAAGMRAMRGRRIGMIFQNPSSHLDPLMRIGEQIAEGVRLHQGASKREARAQAIDLLRQVGIPDPASRVDNFPHEFSGGM RQRAMIAVALGCGPQVLIADEPTTALDVTVQAQILRLLLDLRDRHGLSLIMITHDLGVVAQTCDSIAVMYAGRLCEHGSK RDVLARARHPYTHGLIECQPASSAGSELLRTIPGQPPLLDALPGGCRFHARCSHAGADCPDRLPLMRPMGVAHAAACHYP LVQSREAVS
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=235, Percent_Identity=28.5106382978723, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI4505771, Length=229, Percent_Identity=32.3144104803493, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI9961252, Length=229, Percent_Identity=32.3144104803493, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI42741659, Length=231, Percent_Identity=30.7359307359307, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI9961250, Length=231, Percent_Identity=31.6017316017316, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI171184400, Length=243, Percent_Identity=26.7489711934156, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9665248, Length=247, Percent_Identity=29.9595141700405, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI150417984, Length=213, Percent_Identity=32.3943661971831, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI156105685, Length=232, Percent_Identity=30.6034482758621, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI255708477, Length=238, Percent_Identity=29.8319327731092, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI105990541, Length=216, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI116734710, Length=290, Percent_Identity=24.8275862068966, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI21536378, Length=228, Percent_Identity=28.5087719298246, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI148612844, Length=246, Percent_Identity=27.2357723577236, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI48994883, Length=302, Percent_Identity=48.3443708609272, Blast_Score=276, Evalue=1e-75, Organism=Escherichia coli, GI1787759, Length=322, Percent_Identity=45.3416149068323, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI1789963, Length=318, Percent_Identity=43.3962264150943, Blast_Score=274, Evalue=5e-75, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=44.9438202247191, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1787548, Length=335, Percent_Identity=37.3134328358209, Blast_Score=218, Evalue=6e-58, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=40.0763358778626, Blast_Score=204, Evalue=8e-54, Organism=Escherichia coli, GI1789962, Length=301, Percent_Identity=37.5415282392027, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI1787500, Length=298, Percent_Identity=39.261744966443, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI1787758, Length=289, Percent_Identity=38.0622837370242, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=33.2075471698113, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI48994997, Length=268, Percent_Identity=37.6865671641791, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=35.7142857142857, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1789032, Length=260, Percent_Identity=32.3076923076923, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=32.03125, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788225, Length=241, Percent_Identity=29.8755186721992, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=32.1888412017167, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=35.0467289719626, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=33.7837837837838, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=35.3211009174312, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787370, Length=239, Percent_Identity=30.5439330543933, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=31.2236286919831, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=34.4186046511628, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788761, Length=253, Percent_Identity=29.2490118577075, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=30.5555555555556, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI87081834, Length=237, Percent_Identity=31.2236286919831, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=29.7071129707113, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788644, Length=191, Percent_Identity=31.9371727748691, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790162, Length=237, Percent_Identity=26.1603375527426, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=28.9592760180996, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=28.3783783783784, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=29.9559471365639, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=26.7489711934156, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=26.8085106382979, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790525, Length=241, Percent_Identity=31.9502074688797, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=32.0574162679426, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=27.5423728813559, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=230, Percent_Identity=30, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI48994943, Length=225, Percent_Identity=26.2222222222222, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786319, Length=222, Percent_Identity=27.027027027027, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788450, Length=229, Percent_Identity=24.8908296943231, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=28.8888888888889, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=29.2887029288703, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=26.6949152542373, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786253, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=28.0542986425339, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790534, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787164, Length=233, Percent_Identity=25.3218884120172, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1789586, Length=242, Percent_Identity=24.7933884297521, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=30.0429184549356, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI115534520, Length=244, Percent_Identity=30.327868852459, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17541710, Length=238, Percent_Identity=28.1512605042017, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17558664, Length=251, Percent_Identity=27.0916334661355, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193209708, Length=238, Percent_Identity=27.7310924369748, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI212646699, Length=251, Percent_Identity=25.4980079681275, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115533608, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17569143, Length=233, Percent_Identity=29.1845493562232, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996809, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=227, Percent_Identity=28.6343612334802, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983523, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983516, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324985, Length=233, Percent_Identity=28.755364806867, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=235, Percent_Identity=28.936170212766, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI85726357, Length=254, Percent_Identity=28.740157480315, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI17136662, Length=241, Percent_Identity=30.7053941908714, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24659289, Length=257, Percent_Identity=27.6264591439689, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI28574150, Length=242, Percent_Identity=23.1404958677686, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007328, Length=242, Percent_Identity=23.1404958677686, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI23397593, Length=257, Percent_Identity=27.6264591439689, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=230, Percent_Identity=30, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=232, Percent_Identity=31.4655172413793, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=233, Percent_Identity=24.4635193133047, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24648314, Length=252, Percent_Identity=26.1904761904762, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24666092, Length=217, Percent_Identity=26.7281105990783, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI281363262, Length=230, Percent_Identity=30, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35593; Mature: 35462
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPVLQVSEMSVVASHRGREVTLVDRLSFDLHQGEILGLVGESGSGKTMACRALMQLMP CCCCCEEHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC SPDLHVRGGSVHLNDVDLLKLDAAGMRAMRGRRIGMIFQNPSSHLDPLMRIGEQIAEGVR CCCEEEECCEEEECCCEEEEECHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH LHQGASKREARAQAIDLLRQVGIPDPASRVDNFPHEFSGGMRQRAMIAVALGCGPQVLIA HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHEEEEEEECCCCEEEEE DEPTTALDVTVQAQILRLLLDLRDRHGLSLIMITHDLGVVAQTCDSIAVMYAGRLCEHGS CCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC KRDVLARARHPYTHGLIECQPASSAGSELLRTIPGQPPLLDALPGGCRFHARCSHAGADC CHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCC PDRLPLMRPMGVAHAAACHYPLVQSREAVS CCCCCCCCCCCHHHHHHHCCCHHCCCCCCC >Mature Secondary Structure STPVLQVSEMSVVASHRGREVTLVDRLSFDLHQGEILGLVGESGSGKTMACRALMQLMP CCCCEEHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC SPDLHVRGGSVHLNDVDLLKLDAAGMRAMRGRRIGMIFQNPSSHLDPLMRIGEQIAEGVR CCCEEEECCEEEECCCEEEEECHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH LHQGASKREARAQAIDLLRQVGIPDPASRVDNFPHEFSGGMRQRAMIAVALGCGPQVLIA HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCHHHHEEEEEEECCCCEEEEE DEPTTALDVTVQAQILRLLLDLRDRHGLSLIMITHDLGVVAQTCDSIAVMYAGRLCEHGS CCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCC KRDVLARARHPYTHGLIECQPASSAGSELLRTIPGQPPLLDALPGGCRFHARCSHAGADC CHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCC PDRLPLMRPMGVAHAAACHYPLVQSREAVS CCCCCCCCCCCHHHHHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]