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The map label for this gene is rbfA [H]

Identifier: 66047406

GI number: 66047406

Start: 4970990

End: 4971406

Strand: Reverse

Name: rbfA [H]

Synonym: Psyr_4179

Alternate gene names: 66047406

Gene position: 4971406-4970990 (Counterclockwise)

Preceding gene: 66047407

Following gene: 66047405

Centisome position: 81.58

GC content: 58.51

Gene sequence:

>417_bases
ATGGCAAAAGAATACAGCCGTACCCAACGTATCGGCGATCAGATGCAGCGCGAACTGGCGCAGCTGATCCGTCGCGAAAT
CAAGGACCCACGCGTGGGTCTGGTCACCATCACCGCCGTAGACGTCAGCCGTGACGTGGGTCATGCGAAGATTTTCATGA
CCGTCATGGGTCAGGATAGCGCGGAAGAAATCGCGCAGACCATCAAGGTGCTCAACTCTGCCGCAGGTTTCCTGCGCATG
CAGCTGGCCCGCGAAATGAAGCTGCGCAGCGTGCCTCAACTGCATTTCCACTATGACGAAAGCGTCGTGCGTGGCGCGCA
TCTCTCGGCGCTGATCGAGCGTGCCGTGGCAGAAGACGGTCAGCATCAGGAAGGCCCTGCATCGGCGGATGCAAAGCCTG
AAAGTACCGAGGAATAA

Upstream 100 bases:

>100_bases
GGGCTCTAAACGCAACGCCCGGTCTGGCAATTGTCAGGCCGGGCGTTTGCCGCTTTCAGACTGTCAGGGTTTGGTCCCGG
ATCAGTAACAGGTAACAAGC

Downstream 100 bases:

>100_bases
AGAGTGGCTCAGGTCAAGCGTATACGCCGCAATGTCAGCGGGATCATCCTGCTCGACAAGCCACTGGGTTTCACCTCCAA
CGCCGCTCTGCAAAAGGTTC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MAKEYSRTQRIGDQMQRELAQLIRREIKDPRVGLVTITAVDVSRDVGHAKIFMTVMGQDSAEEIAQTIKVLNSAAGFLRM
QLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAEDGQHQEGPASADAKPESTEE

Sequences:

>Translated_138_residues
MAKEYSRTQRIGDQMQRELAQLIRREIKDPRVGLVTITAVDVSRDVGHAKIFMTVMGQDSAEEIAQTIKVLNSAAGFLRM
QLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAEDGQHQEGPASADAKPESTEE
>Mature_137_residues
AKEYSRTQRIGDQMQRELAQLIRREIKDPRVGLVTITAVDVSRDVGHAKIFMTVMGQDSAEEIAQTIKVLNSAAGFLRMQ
LAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAEDGQHQEGPASADAKPESTEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=127, Percent_Identity=40.9448818897638, Blast_Score=114, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15397; Mature: 15266

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEYSRTQRIGDQMQRELAQLIRREIKDPRVGLVTITAVDVSRDVGHAKIFMTVMGQDS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHEEEEEHHCCCC
AEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAEDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHHHHHHHHHCCC
QHQEGPASADAKPESTEE
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKEYSRTQRIGDQMQRELAQLIRREIKDPRVGLVTITAVDVSRDVGHAKIFMTVMGQDS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHEEEEEHHCCCC
AEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALIERAVAEDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCHHHHHHHHHHHHHHHHHHCCC
QHQEGPASADAKPESTEE
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA