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The map label for this gene is rpoX [H]

Identifier: 66047375

GI number: 66047375

Start: 4936146

End: 4936454

Strand: Direct

Name: rpoX [H]

Synonym: Psyr_4148

Alternate gene names: 66047375

Gene position: 4936146-4936454 (Clockwise)

Preceding gene: 66047374

Following gene: 66047376

Centisome position: 81.0

GC content: 50.16

Gene sequence:

>309_bases
ATGCAAGTCAACATCAGTGGACACCAACTGGAAGTGACCAAACCCCTTCGTGAATACGTTGAGCTCAAGCTCAAGAAGCT
CGAGGGGCATTTTGACAAGATTACCAACGTGCAGGTCACGATGACGGTCGAAAAGCTCAAGCAGAAGATCGAAGCCACGT
TGCACATCCATGGTGGAGAGGTCGTTGCCAATGCTGAACATGATGACATGTATGCTGCCATCGACCTGCTCACTGACAAG
CTAGACCGACAATTGCTCAAGCATAAGGAAAAGCAGCAAAGCATCCTCAAAGGTGCGGCCGCTCGCTAA

Upstream 100 bases:

>100_bases
CAGTGAGCGTAAGCGGCTGATGTGATGCAGGCCGAGCCACAGCGTCCCAGAGGCATGCGCCATGCCTGCCTCTTTATGCA
CTGGCAAAGGAGAAAGCTGT

Downstream 100 bases:

>100_bases
CGCCCATTTAATGATCCGAATCGAAAATATCCTGACCCCCGGCCGCTCCCTTGTGAACGTGCCGGGCGGCAGTAAAAAGC
GTGTACTCGAAGAAATTGCC

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMTVEKLKQKIEATLHIHGGEVVANAEHDDMYAAIDLLTDK
LDRQLLKHKEKQQSILKGAAAR

Sequences:

>Translated_102_residues
MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMTVEKLKQKIEATLHIHGGEVVANAEHDDMYAAIDLLTDK
LDRQLLKHKEKQQSILKGAAAR
>Mature_102_residues
MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMTVEKLKQKIEATLHIHGGEVVANAEHDDMYAAIDLLTDK
LDRQLLKHKEKQQSILKGAAAR

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=91, Percent_Identity=56.043956043956, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI1788949, Length=91, Percent_Identity=37.3626373626374, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11610; Mature: 11610

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMTVEKLKQKIEATLHIHGGE
CEECCCCCEEEEHHHHHHHHHHHHHHHHCHHHHHCCEEEEEEHHHHHHHHHHHEEECCCE
VVANAEHDDMYAAIDLLTDKLDRQLLKHKEKQQSILKGAAAR
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQVNISGHQLEVTKPLREYVELKLKKLEGHFDKITNVQVTMTVEKLKQKIEATLHIHGGE
CEECCCCCEEEEHHHHHHHHHHHHHHHHCHHHHHCCEEEEEEHHHHHHHHHHHEEECCCE
VVANAEHDDMYAAIDLLTDKLDRQLLKHKEKQQSILKGAAAR
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2602128; 12534463 [H]