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The map label for this gene is rhaS [H]

Identifier: 66047348

GI number: 66047348

Start: 4909922

End: 4910926

Strand: Direct

Name: rhaS [H]

Synonym: Psyr_4121

Alternate gene names: 66047348

Gene position: 4909922-4910926 (Clockwise)

Preceding gene: 66047343

Following gene: 66047352

Centisome position: 80.57

GC content: 60.6

Gene sequence:

>1005_bases
ATGCCGATCCGACACGCCACTCTTCTGCGCCGCGTAAGCATCCTGACCACGGACAAGATGTTTGCCTCGACCGTCATGCA
GGCCAAGGACTTCTTCCATCTGGCGAGCCTGCGCTACAGCAAGCAATTGGGCCACGGCCTCGTACCCGCCTTCGAAACGC
GCCTGGTCAGCCCGGACGGGCTTTCGGTCAGCAGCTTCAGCGACGTCACCCTGCCGGTCGACGGCGCGCTGTGCCAGAGC
GACATCATCGTCATCCCGGCCTTTTGGGACGATTTTGAAACCCTCTGCCAGCGTTACCCACAGATCCTGCCGTGGTTGCG
CGAGCAGCACGCCAACGGTGCCGTACTCTGCGCCGAAGCCACCGGTGTCTACTGGCTTGCCGAAGCCGGGTTGCTGGACG
GCAAGGAGGCGACGACCTACTGGCGTTTTTTCAGCGCATTTGCCGAGCGCTATCCCAAGGTCCTGCTCAATCAGGAGAAG
CACCTGACCGATGCCGACAACGTGTATTGCGCGGGCGGCACGACCTCGGCCTGCGATCTGTACATTTATCTGATCGAGCG
CTTCTGCGGCGCCAATGTCGCCCAGGCCGTCGCCCGCGACATCCTCTATGAAGTGCGGCGCACGTACTCGCCGGGGCGAA
TCGGCTTTGGCGGTCAGAAGCTTCATCAGGACGTGGTCATTCTGCAGATTCAGCACTGGCTGGAAGAGCACTTTGCCGAC
AAGTTCCGTTTTGAAGACGTGGCCCGCGAGCACGGCATGAGCATTCGCAATTTCATGCGCCGCTTTCAGACCGCCACAGG
CGACAAGCCGCTGCATTACCTGCAACGGCTGCGGATCGAAACGGCAAAGGGATTGCTCTCGGGGACGCGCAAGAGCATCA
AGACCATCAGCTACGAAGTGGGCTACGACGACGCCAGCTTCTTTGCCCGACTGTTCCGCCAGCACACCGAGCTGTCACCC
AATCAGTACCGGCAACAGTTCGAGAGTCAGAGGGAGAAGCTATAA

Upstream 100 bases:

>100_bases
CCCTGCCAAGGAGCCCCACGTAACGAGGCTGGACAGTTTTGGCAAAAAATAAGACGATCCAGCCGTTGCTTGACCATTTA
CCCATATAAGAATAACGACT

Downstream 100 bases:

>100_bases
GCTGCAAGCTGCAAGCTGCAAGCTGCAAGCTGCAAGCTGCAAGAGCCTGGGCTTTTAGCTTGCGGCTTGCAGCTTGAAAC
TTGCCGCAGCGACTAGGCCC

Product: helix-turn-helix, AraC type

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MPIRHATLLRRVSILTTDKMFASTVMQAKDFFHLASLRYSKQLGHGLVPAFETRLVSPDGLSVSSFSDVTLPVDGALCQS
DIIVIPAFWDDFETLCQRYPQILPWLREQHANGAVLCAEATGVYWLAEAGLLDGKEATTYWRFFSAFAERYPKVLLNQEK
HLTDADNVYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVRRTYSPGRIGFGGQKLHQDVVILQIQHWLEEHFAD
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGTRKSIKTISYEVGYDDASFFARLFRQHTELSP
NQYRQQFESQREKL

Sequences:

>Translated_334_residues
MPIRHATLLRRVSILTTDKMFASTVMQAKDFFHLASLRYSKQLGHGLVPAFETRLVSPDGLSVSSFSDVTLPVDGALCQS
DIIVIPAFWDDFETLCQRYPQILPWLREQHANGAVLCAEATGVYWLAEAGLLDGKEATTYWRFFSAFAERYPKVLLNQEK
HLTDADNVYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVRRTYSPGRIGFGGQKLHQDVVILQIQHWLEEHFAD
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGTRKSIKTISYEVGYDDASFFARLFRQHTELSP
NQYRQQFESQREKL
>Mature_333_residues
PIRHATLLRRVSILTTDKMFASTVMQAKDFFHLASLRYSKQLGHGLVPAFETRLVSPDGLSVSSFSDVTLPVDGALCQSD
IIVIPAFWDDFETLCQRYPQILPWLREQHANGAVLCAEATGVYWLAEAGLLDGKEATTYWRFFSAFAERYPKVLLNQEKH
LTDADNVYCAGGTTSACDLYIYLIERFCGANVAQAVARDILYEVRRTYSPGRIGFGGQKLHQDVVILQIQHWLEEHFADK
FRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGTRKSIKTISYEVGYDDASFFARLFRQHTELSPN
QYRQQFESQREKL

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=93, Percent_Identity=38.7096774193548, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790391, Length=101, Percent_Identity=34.6534653465347, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787987, Length=109, Percent_Identity=30.2752293577982, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38283; Mature: 38152

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRHATLLRRVSILTTDKMFASTVMQAKDFFHLASLRYSKQLGHGLVPAFETRLVSPDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC
LSVSSFSDVTLPVDGALCQSDIIVIPAFWDDFETLCQRYPQILPWLREQHANGAVLCAEA
CCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
TGVYWLAEAGLLDGKEATTYWRFFSAFAERYPKVLLNQEKHLTDADNVYCAGGTTSACDL
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEECCCCCHHHHH
YIYLIERFCGANVAQAVARDILYEVRRTYSPGRIGFGGQKLHQDVVILQIQHWLEEHFAD
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGTRKSIKTISYEV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GYDDASFFARLFRQHTELSPNQYRQQFESQREKL
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PIRHATLLRRVSILTTDKMFASTVMQAKDFFHLASLRYSKQLGHGLVPAFETRLVSPDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC
LSVSSFSDVTLPVDGALCQSDIIVIPAFWDDFETLCQRYPQILPWLREQHANGAVLCAEA
CCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
TGVYWLAEAGLLDGKEATTYWRFFSAFAERYPKVLLNQEKHLTDADNVYCAGGTTSACDL
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCEEECCCCCHHHHH
YIYLIERFCGANVAQAVARDILYEVRRTYSPGRIGFGGQKLHQDVVILQIQHWLEEHFAD
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KFRFEDVAREHGMSIRNFMRRFQTATGDKPLHYLQRLRIETAKGLLSGTRKSIKTISYEV
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
GYDDASFFARLFRQHTELSPNQYRQQFESQREKL
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA