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The map label for this gene is ycjZ [C]

Identifier: 66047029

GI number: 66047029

Start: 4518247

End: 4519140

Strand: Direct

Name: ycjZ [C]

Synonym: Psyr_3801

Alternate gene names: 66047029

Gene position: 4518247-4519140 (Clockwise)

Preceding gene: 66047026

Following gene: 66047031

Centisome position: 74.15

GC content: 61.41

Gene sequence:

>894_bases
ATGAGCACACCCAAACTCAATGATCTGCAAGCCTTTCTGCAGGTGGCGCGCGATCAGAGCTTTACCAAGGCCGCCACCAA
ACTCGGCGTTACGCCTTCAGCCCTCAGCCACACCCTGCGCGGCCTTGAAGAGCGCATGGGCCTGCGCCTTTTGGCGAGAA
CCACCCGCAACGTAGCCCCGACCGAAGCCGGCGAACGGCTGATGCGCTCGATCGGGCCGCTGCTGGATCAGATTGCCGCA
GAAGTCGAAGTGCTGGGCGAACTGCGCGACAAGCCCGCCGGCACCATTCGCATTACCTGCTCCGATGACGCCGCAGAAGG
CATCATCCGCCCGATGCTTGCAGGGTTTCTGGCGCAGTACCCGGATATCCAGATCGAGATCTGCATCGACTACGGCTTCA
CCAATATTGTCAGCGAACGTTTCGATGCCGGCATCCGCCTGGGTGAGTCCATCAGCAAGGACATGATTGCCGTGCGCCTC
GGGCCTGACTGGCGCTTGTCAGTAGTTGGCTCGCCGGCCTACTTCGAGCGCCATCCTGTCCCGCTGCAGCCGCAGGACCT
GACTCAACACACGTGCATCAACATCCGCCACTCGCCAAACGGCAGCTGCTACGCCTGGGAATTCGAGAAGGGCAGCCGCA
AGCTGAACATACGGGTCAATGGGCAATTCACGTCAAACAGCATGATTCATGTGCTCAACGCCGCACTGGACGGCGTGGGC
CTGGCCTACGTGCCGGACTCCATGGCCGAGCCGCACATCGCCAGCGGACGCCTGAAAGAAGTGCTGGTCGACTGGAGCCC
GTATTTCGAAGGCTTTCACTTGTACTACCCGAACCGGCGACAGGCGTCGCCGGCGTTCAGTGCGTTTGTCGAGGCGGTGA
GGTATCGGGGCTAG

Upstream 100 bases:

>100_bases
TGACCTGACGACGTTAAAAATTAGTCGGCACAGGTTAGGGCAAAGGTATTAGGATGATTAGACACCACAATTTAAACGCG
CTTGTGAGAAGGATTCAGCA

Downstream 100 bases:

>100_bases
CCCCCCGCCGCCTGATTACTGCGCGGCTTTCAACGCATCCGCGACCTTGTTCAGCGAACCTTGAGCAGGCTCGGCAAGCA
GTTTCAGCTCGGTGGTTTTG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSTPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGERLMRSIGPLLDQIAA
EVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRL
GPDWRLSVVGSPAYFERHPVPLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVG
LAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG

Sequences:

>Translated_297_residues
MSTPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGERLMRSIGPLLDQIAA
EVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRL
GPDWRLSVVGSPAYFERHPVPLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVG
LAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG
>Mature_296_residues
STPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGERLMRSIGPLLDQIAAE
VEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLG
PDWRLSVVGSPAYFERHPVPLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGL
AYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=45.7912457912458, Blast_Score=288, Evalue=3e-79,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=38.2758620689655, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1789440, Length=265, Percent_Identity=29.4339622641509, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=29.3706293706294, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=30.3030303030303, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=29.0102389078498, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789639, Length=261, Percent_Identity=26.8199233716475, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=275, Percent_Identity=28, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=25.7731958762887, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788706, Length=256, Percent_Identity=25.390625, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790011, Length=265, Percent_Identity=22.6415094339623, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=119, Percent_Identity=35.2941176470588, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=29.3785310734463, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=29.1390728476821, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=128, Percent_Identity=34.375, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786713, Length=268, Percent_Identity=26.1194029850746, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32931; Mature: 32800

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAP
CCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEAGERLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PDIQIEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPV
CCCEEEEEEECCHHHHHHHHHHHHHHHCCHHCCCEEEEEECCCEEEEEECCCHHHCCCCC
PLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVG
CCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEECEECCCHHHHHHHHHHCCCC
LAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG
EEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAP
CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEAGERLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PDIQIEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPV
CCCEEEEEEECCHHHHHHHHHHHHHHHCCHHCCCEEEEEECCCEEEEEECCCHHHCCCCC
PLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVG
CCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEEEECEECCCHHHHHHHHHHCCCC
LAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG
EEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]