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The map label for this gene is nahR [H]

Identifier: 66047024

GI number: 66047024

Start: 4513374

End: 4514273

Strand: Reverse

Name: nahR [H]

Synonym: Psyr_3796

Alternate gene names: 66047024

Gene position: 4514273-4513374 (Counterclockwise)

Preceding gene: 66047027

Following gene: 66047021

Centisome position: 74.08

GC content: 63.22

Gene sequence:

>900_bases
ATGAACAATACCTTGCGACGTATCGACCTCAATCTGCTGGTCACGCTGGATGCATTGCTCTCGGAGCAGAACGTGACCCG
CGCGGCGCATCGGCTGAACCTGACCCAGCCCACGGTCAGCCTGCAATTGGGCAGGCTGAGGCAGGTGCTGGAGGATCCAT
TGTTGCTGCCGGGACCGCGGGGCATGACCCCGACTGCGCGGGCTGAAGAACTGCGCGAACCACTCAGGCAGGCGCTTGCA
GCGCTGGAGTCTGCGTTATTGCCCGGCCGGGATTTTGATCCGGCAACGGCCGATCACACCTGGCGCGTGGCCGCCAGCGA
TTACGCGACCACCGCTTTGATATGGCCGTCGCTCGGCAGGTTGCGCAACAGTGCTCCGGGCACGCGCCTGGCCATGCTGA
ACAAGCAGCCGGTCAGCCTGGCCGCGGATCTTGAAAGTGGTCGGCTGGATCTGGCGTTGCACACCCGCGACGAGGCGCCG
CCCAAGCTGCGCCAGCGGTCGTTGATCCATGAGCGTTATGTGCTTGCTGCCCGGCATGATCATCCAGACCTTGTGCAACC
TGTGTCGCTGACACGTTTCTGTGAGCTGGAGCATGCGGTCATGTCTCCCAACGGCGGCGGCTTCGCTGGAAGCACCGATC
AGGCTCTGGCGGCGCTGGGGTTAAGCCGGCGGGTGGTGTTGTCGGCTCCGCATTTCGGTTCGCTGGTGTCTGCACTGACC
TGCAGCGACCTGGTTGCGGTAGTGCCTGAACGGCTGGTGCGCAATCAGCCGACGCTCGTGGTTCAGGAACCGCCGCTTTC
GATTCCCGGGTTTGAAATGCTCATGCTGTGGCCAGAGCGTTTGCACCGCGATCCGGCTCACAGGTGGCTGCGAGAACTGA
TGGTCGCGGCCATCGATTAA

Upstream 100 bases:

>100_bases
AAGTACGTTCATGAGAGTCTCCGGTTTGTCGGTAATGAGGCAACGCTACAGACTCGCTCGGGTATGCTGGAAATCAATCT
CCCAAACACTGGGTATTTGC

Downstream 100 bases:

>100_bases
GCCGTGCGGCGCCTATGACTCAAGCCCGCAGCCTGCGCTCGCGCAACGCACTTAAACACTCGCGCCCCGCAGCCTCGGCG
GTTTGCATGACCGTCTGGCT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALA
ALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAP
PKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALT
CSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID

Sequences:

>Translated_299_residues
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALA
ALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAP
PKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALT
CSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>Mature_299_residues
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALA
ALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAP
PKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALT
CSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=295, Percent_Identity=27.4576271186441, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081766, Length=251, Percent_Identity=25.8964143426295, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32986; Mature: 32986

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPR
CCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHH
LRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHD
HHCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEECCC
HPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALT
CCCHHCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHH
CSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPR
CCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHH
LRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHD
HHCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEECCC
HPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALT
CCCHHCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHH
CSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHCCHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]