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The map label for this gene is bphP [H]

Identifier: 66047002

GI number: 66047002

Start: 4493125

End: 4494312

Strand: Reverse

Name: bphP [H]

Synonym: Psyr_3774

Alternate gene names: 66047002

Gene position: 4494312-4493125 (Counterclockwise)

Preceding gene: 66047003

Following gene: 66047001

Centisome position: 73.75

GC content: 61.53

Gene sequence:

>1188_bases
ATGACCGTTGAACAGGTGAGCCTGCCCGTCACCGAAGACCTCTACGAGCATGCGCCCTGTGGTCTGTTGATCACGTTGCC
CAACGGCACCATAGAGCGCGCCAATCTGACGTTTTGCCGATGGCTGGGTCTGGAGCGCGACGCTGTTGTGGGCCGCCGCT
TTCAGGATTTGCTGAGCCTGGCAGGCAAGGCCTTTCTGCAGACTCACTGGGCGCCCACGCTGCAGTCGCAAGGGTCAATT
GCCGAAGTCAAGGTCGAGCTGATTCATGCCGATGGCCGCCCCATCCCGATGATGCTCAACGCCGTACGCCGCGAGTACCC
GTCGGGGTATCTGCATGAAGTGGCCGTGTTCCTGGCCGAAGAGCGCAACAAGTACGAGCGCGAACTGCTGGCTGCCCGCA
AGATTGCCGAAGAACTCCTGCAACAGCAGATGACCGTGCAGAGCGAGCTGACCTCGGCGCGCAATCGCTTGCGTCTGGCG
CATGCCGAGGCGGAGATCCGGGCTATTTTTGCCGAGCAGATGATTGGCATCGTCAGCCACGACCTGCGCAACCCGCTGGC
CGCGATCAAGATGGCCGCCGGACTGCTGGAGCGCACGCCACTGGAGTCGCGCCAAGAGCGGATTCTGGGACACATCAATC
ATTCCACCGACCGTGCCGATCGCATGATTGTCGACCTGCTGGATTTCACTCACGCCCGGGTGGGCAGTGGCATTACCGTC
GTTCCTCAGCCTATCGATTTTCACGCAGTCGTTGCCCGGGGCGTCGAAGAACTGCGCCAGGTTTTCCCGGGGCGGGTGCT
GACCCATCGCAGCGAAGGACAGGGCGCCTGTTCGGCGGATCCTGACCGCCTGCTGCAGATGCTCGGCAATCTGGTCAGCA
ATGCCATCAATTACGGCGCCGACGACGGTGAGGTTTTGATTACGTCGTCGTTCGACACCTGGATGATCAAGCTGTCGGTG
CACAACCTCGGTGAACCGATACCGATGGAGAAGGTAGACGACCTGTACGAGCCCGTCGTACGCGTGGTCAGCGACAGTGA
CGAGACCCGCACCGTCGGGCTCGGCCTGTTTATCGTGCGCGAGATCGTTCGAGCCCATCTGGGCGATGTGACGGTTCGCT
CTTCGGCTGAAGAGGGCACGACGTTCACGGTGGCGTTTCCGCGTCCCCCGGTGAAATCCGAGGTTTGA

Upstream 100 bases:

>100_bases
CACATGATCGACAATGTAGGGCACTACCCGCACATGAGCGCAGCACAGGAATGCATTACTGCGATGAATCAGTTTCTGGC
CTCTTGCGAGAGTGCCGCCC

Downstream 100 bases:

>100_bases
TCAGGTTTCGTACAGGTTGACGAGCAACCCGTGTTATTCACGGGTGCAGAAAAATCGTTACAGTCCTAAACTAACGTGCT
GCGTCATCACCTCAAGGCTC

Product: PAS

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTVEQVSLPVTEDLYEHAPCGLLITLPNGTIERANLTFCRWLGLERDAVVGRRFQDLLSLAGKAFLQTHWAPTLQSQGSI
AEVKVELIHADGRPIPMMLNAVRREYPSGYLHEVAVFLAEERNKYERELLAARKIAEELLQQQMTVQSELTSARNRLRLA
HAEAEIRAIFAEQMIGIVSHDLRNPLAAIKMAAGLLERTPLESRQERILGHINHSTDRADRMIVDLLDFTHARVGSGITV
VPQPIDFHAVVARGVEELRQVFPGRVLTHRSEGQGACSADPDRLLQMLGNLVSNAINYGADDGEVLITSSFDTWMIKLSV
HNLGEPIPMEKVDDLYEPVVRVVSDSDETRTVGLGLFIVREIVRAHLGDVTVRSSAEEGTTFTVAFPRPPVKSEV

Sequences:

>Translated_395_residues
MTVEQVSLPVTEDLYEHAPCGLLITLPNGTIERANLTFCRWLGLERDAVVGRRFQDLLSLAGKAFLQTHWAPTLQSQGSI
AEVKVELIHADGRPIPMMLNAVRREYPSGYLHEVAVFLAEERNKYERELLAARKIAEELLQQQMTVQSELTSARNRLRLA
HAEAEIRAIFAEQMIGIVSHDLRNPLAAIKMAAGLLERTPLESRQERILGHINHSTDRADRMIVDLLDFTHARVGSGITV
VPQPIDFHAVVARGVEELRQVFPGRVLTHRSEGQGACSADPDRLLQMLGNLVSNAINYGADDGEVLITSSFDTWMIKLSV
HNLGEPIPMEKVDDLYEPVVRVVSDSDETRTVGLGLFIVREIVRAHLGDVTVRSSAEEGTTFTVAFPRPPVKSEV
>Mature_394_residues
TVEQVSLPVTEDLYEHAPCGLLITLPNGTIERANLTFCRWLGLERDAVVGRRFQDLLSLAGKAFLQTHWAPTLQSQGSIA
EVKVELIHADGRPIPMMLNAVRREYPSGYLHEVAVFLAEERNKYERELLAARKIAEELLQQQMTVQSELTSARNRLRLAH
AEAEIRAIFAEQMIGIVSHDLRNPLAAIKMAAGLLERTPLESRQERILGHINHSTDRADRMIVDLLDFTHARVGSGITVV
PQPIDFHAVVARGVEELRQVFPGRVLTHRSEGQGACSADPDRLLQMLGNLVSNAINYGADDGEVLITSSFDTWMIKLSVH
NLGEPIPMEKVDDLYEPVVRVVSDSDETRTVGLGLFIVREIVRAHLGDVTVRSSAEEGTTFTVAFPRPPVKSEV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=217, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082128, Length=222, Percent_Identity=26.1261261261261, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790861, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081816, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994928, Length=237, Percent_Identity=28.2700421940928, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693157, Length=219, Percent_Identity=26.9406392694064, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786912, Length=245, Percent_Identity=25.3061224489796, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788713, Length=258, Percent_Identity=24.031007751938, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788549, Length=251, Percent_Identity=25.8964143426295, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786600, Length=244, Percent_Identity=26.6393442622951, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789149, Length=289, Percent_Identity=26.2975778546713, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 43924; Mature: 43793

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEQVSLPVTEDLYEHAPCGLLITLPNGTIERANLTFCRWLGLERDAVVGRRFQDLLSL
CCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHH
AGKAFLQTHWAPTLQSQGSIAEVKVELIHADGRPIPMMLNAVRREYPSGYLHEVAVFLAE
HHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ERNKYERELLAARKIAEELLQQQMTVQSELTSARNRLRLAHAEAEIRAIFAEQMIGIVSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLRNPLAAIKMAAGLLERTPLESRQERILGHINHSTDRADRMIVDLLDFTHARVGSGITV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
VPQPIDFHAVVARGVEELRQVFPGRVLTHRSEGQGACSADPDRLLQMLGNLVSNAINYGA
ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
DDGEVLITSSFDTWMIKLSVHNLGEPIPMEKVDDLYEPVVRVVSDSDETRTVGLGLFIVR
CCCCEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EIVRAHLGDVTVRSSAEEGTTFTVAFPRPPVKSEV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
TVEQVSLPVTEDLYEHAPCGLLITLPNGTIERANLTFCRWLGLERDAVVGRRFQDLLSL
CCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHH
AGKAFLQTHWAPTLQSQGSIAEVKVELIHADGRPIPMMLNAVRREYPSGYLHEVAVFLAE
HHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ERNKYERELLAARKIAEELLQQQMTVQSELTSARNRLRLAHAEAEIRAIFAEQMIGIVSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLRNPLAAIKMAAGLLERTPLESRQERILGHINHSTDRADRMIVDLLDFTHARVGSGITV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
VPQPIDFHAVVARGVEELRQVFPGRVLTHRSEGQGACSADPDRLLQMLGNLVSNAINYGA
ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
DDGEVLITSSFDTWMIKLSVHNLGEPIPMEKVDDLYEPVVRVVSDSDETRTVGLGLFIVR
CCCCEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EIVRAHLGDVTVRSSAEEGTTFTVAFPRPPVKSEV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]