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The map label for this gene is bphP [H]

Identifier: 66047001

GI number: 66047001

Start: 4491827

End: 4493011

Strand: Reverse

Name: bphP [H]

Synonym: Psyr_3773

Alternate gene names: 66047001

Gene position: 4493011-4491827 (Counterclockwise)

Preceding gene: 66047002

Following gene: 66047000

Centisome position: 73.73

GC content: 60.17

Gene sequence:

>1185_bases
ATGCGGCGATCCATTTCAAATGATGTGGCCACGATCAACCGGATCAGCGCAGTGCCGGCCATCCTGCAGGTCATTGCCGA
ATCCACCGGGCTGGGTTTCGCCGCCGTGGCGCGTGTAACCGAAACCAGCTGGACGGCCTGTGCGGTCCTGGACAAGCTCG
ACTTCGGTTTGAAGCCCGGCGGTGAGCTGGAGCTGAGCAGCACCATCTGCCACGAGATTCGCAGTTCCCACAAGCCTGTG
GTGATTGACCATGTCGCCGAGGACCCGCTGTTCTGTGCGCATGACACACCACGTCTGTACAGCTTCCAGAGCTATATCTC
GGTGCCGATCTTTCTTTCCGACGGCTCCTTTTTCGGCACTATCTGCGCGCTGGATCCCAAGCCTGCAAAGCTGATCGGGA
CGCCCATCGAGGCCATGATGGTGTCGTTCGCACGTCTTCTGGCGCTGCAGATCGAGGCCGAGGAAAACCTGCAACAGGCG
CGTGAAGACCTGCTCGCCGAACGTGAGGTGGCTGAGCTGCGCGAGCAGTTTATCGCGGTGCTGGGGCACGACCTGCGCAA
CCCGTTGTTTGCCATCAATGCCAGTGCCGAATTGCTGCTGCGTCGTCCGCTGGATGAAAAGGCCCAGCAGATCGTGCAAC
ACATCCTGACCTCTGGCCAGCGCGCCTCGCAGTTGGTCGATGACGTGCTCGATTTTGCCCGTGGTCGTATGGGGCATGGC
ATTCCTCTGAGTATCCATGAGGCACACGGTCTGGATAAAACCCTGGAGCATGTGATTTCAGAGGTGCAACGCGTTCACCC
GTCGCGGCCGATTCACTCGAACATAGGCGCGCTGGAGCGTATCCGCTGCGATCATGAGCGGATCGCGCAGCTGCTCTCCA
ACCTGGTGTCCAACGCGATCAGCCATGGTGATGCCGAGAGCCCGGTCGAAGTGACGGCAGGCGTGCATGGCGAGGTGTTT
GTGCTCAGCGTTACCAATCAGGGAGAGCCGATACCTGAATCGGTTCGTGCGCAACTGTTCCTGCCGTACTCCAGACCCAT
CACCGACGAGCCGCAAGCCGGGCTCGGGCTGGGGCTGTACATCGCCAGCGAGATCGCCATTGCTCATGGAGGTACGCTCG
AGGTGTGCTCGACGCGAGAGCAGGGCACGGTCTTTACCTTCAGTATGCCGTTGAAGTCTGCATAG

Upstream 100 bases:

>100_bases
AGGTTGACGAGCAACCCGTGTTATTCACGGGTGCAGAAAAATCGTTACAGTCCTAAACTAACGTGCTGCGTCATCACCTC
AAGGCTCATACAGGTTCTAC

Downstream 100 bases:

>100_bases
GCATCCTGCGTCAGCCTGTGTCCTGTGATCACACAGACTGCCCGCCAGGCGCTTTTTTGTGCTCCGCAAACCTCGGGTGC
AGGCCGTCGCGTCGTTCGGC

Product: GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MRRSISNDVATINRISAVPAILQVIAESTGLGFAAVARVTETSWTACAVLDKLDFGLKPGGELELSSTICHEIRSSHKPV
VIDHVAEDPLFCAHDTPRLYSFQSYISVPIFLSDGSFFGTICALDPKPAKLIGTPIEAMMVSFARLLALQIEAEENLQQA
REDLLAEREVAELREQFIAVLGHDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGHG
IPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLVSNAISHGDAESPVEVTAGVHGEVF
VLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGLGLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMPLKSA

Sequences:

>Translated_394_residues
MRRSISNDVATINRISAVPAILQVIAESTGLGFAAVARVTETSWTACAVLDKLDFGLKPGGELELSSTICHEIRSSHKPV
VIDHVAEDPLFCAHDTPRLYSFQSYISVPIFLSDGSFFGTICALDPKPAKLIGTPIEAMMVSFARLLALQIEAEENLQQA
REDLLAEREVAELREQFIAVLGHDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGHG
IPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLVSNAISHGDAESPVEVTAGVHGEVF
VLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGLGLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMPLKSA
>Mature_394_residues
MRRSISNDVATINRISAVPAILQVIAESTGLGFAAVARVTETSWTACAVLDKLDFGLKPGGELELSSTICHEIRSSHKPV
VIDHVAEDPLFCAHDTPRLYSFQSYISVPIFLSDGSFFGTICALDPKPAKLIGTPIEAMMVSFARLLALQIEAEENLQQA
REDLLAEREVAELREQFIAVLGHDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGHG
IPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLVSNAISHGDAESPVEVTAGVHGEVF
VLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGLGLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMPLKSA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=247, Percent_Identity=31.5789473684211, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081816, Length=246, Percent_Identity=29.2682926829268, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082128, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789149, Length=291, Percent_Identity=26.1168384879725, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790861, Length=237, Percent_Identity=27.4261603375527, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787894, Length=222, Percent_Identity=27.027027027027, Blast_Score=62, Evalue=9e-11,
Organism=Escherichia coli, GI1788549, Length=219, Percent_Identity=24.2009132420091, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 42880; Mature: 42880

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSISNDVATINRISAVPAILQVIAESTGLGFAAVARVTETSWTACAVLDKLDFGLKPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCC
GELELSSTICHEIRSSHKPVVIDHVAEDPLFCAHDTPRLYSFQSYISVPIFLSDGSFFGT
CCEEHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCEEHHHHHEEEEEEECCCEEEE
ICALDPKPAKLIGTPIEAMMVSFARLLALQIEAEENLQQAREDLLAEREVAELREQFIAV
EEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGHDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGHG
HHHHHCCCEEEECCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
IPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLVSNAI
CCEEEHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
SHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGLGLGLY
HCCCCCCCCEEECCCCCCEEEEEECCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCHHH
IASEIAIAHGGTLEVCSTREQGTVFTFSMPLKSA
HHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRRSISNDVATINRISAVPAILQVIAESTGLGFAAVARVTETSWTACAVLDKLDFGLKPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCC
GELELSSTICHEIRSSHKPVVIDHVAEDPLFCAHDTPRLYSFQSYISVPIFLSDGSFFGT
CCEEHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCEEHHHHHEEEEEEECCCEEEE
ICALDPKPAKLIGTPIEAMMVSFARLLALQIEAEENLQQAREDLLAEREVAELREQFIAV
EEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGHDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGHG
HHHHHCCCEEEECCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
IPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLVSNAI
CCEEEHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHH
SHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGLGLGLY
HCCCCCCCCEEECCCCCCEEEEEECCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCHHH
IASEIAIAHGGTLEVCSTREQGTVFTFSMPLKSA
HHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]