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The map label for this gene is ydhO [H]

Identifier: 66046912

GI number: 66046912

Start: 4369999

End: 4370544

Strand: Reverse

Name: ydhO [H]

Synonym: Psyr_3683

Alternate gene names: 66046912

Gene position: 4370544-4369999 (Counterclockwise)

Preceding gene: 66046913

Following gene: 66046910

Centisome position: 71.72

GC content: 61.72

Gene sequence:

>546_bases
ATGTCGATTGCGTTGCGCCTGTTAGTCATCTCTGTTGCTGCGTTGCTCGGTGCCTGCGCCAGCGCGCCGCCTCCGCCCAA
AGCGCCCCGGATCGTTCAGCGTCCGGTGGTCACTGCACCTCCCCAGATTCTTTCTCCGGCTGCCGAAGACGTGCTGTTTC
GTGCGTTGGGGCTGGTTGGCACGCCTTATCGCTGGGGCGGCAACACGCCTGACTCCGGTTTCGATTGCAGCGGTCTTATA
GGCTATGTCTATCGTGATGCGGCGGGCATTTCCCTGCCGCGTTCCACACGCGAGATGATCGTGATGGGCGCACCGAATAT
TCGTCGCGAGCAATTGCAGTCAGGTGATCTGGTGTTCTTCGCCACATCGGGCGGTTCTCAGGTGTCCCACGCCGGGATCT
ATGTCGGCGAAGGCCGCTTCGTGCATGCGCCGGCCACCGGCGGCACGGTCAAGCTCGACAGCCTCGACAAGCCTTACTGG
CAGAGAGCCTATCTCAACGCCAAACGCGTGATTCAGCCGTCCAGCCTGGCGCAGAATCGGCCTTAA

Upstream 100 bases:

>100_bases
GGCGTAAATAAATAGAACGCGCAGCACAAGACCTTCGGGTCTTTATGCGTTTTTGAGCTTCTCGGCAGCGTAAGCCGCAT
CCGGATAGGTTGTTGTGGTT

Downstream 100 bases:

>100_bases
GCGCTTCGCGCTGATTGCTCTGCGCGCACTCAAGAGCGTCCAGAACTGCATGCCCACGCCCACGCGGAGCGCTCAACGTT
ACTTTAGATTCTGGCCGTAG

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSIALRLLVISVAALLGACASAPPPPKAPRIVQRPVVTAPPQILSPAAEDVLFRALGLVGTPYRWGGNTPDSGFDCSGLI
GYVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFFATSGGSQVSHAGIYVGEGRFVHAPATGGTVKLDSLDKPYW
QRAYLNAKRVIQPSSLAQNRP

Sequences:

>Translated_181_residues
MSIALRLLVISVAALLGACASAPPPPKAPRIVQRPVVTAPPQILSPAAEDVLFRALGLVGTPYRWGGNTPDSGFDCSGLI
GYVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFFATSGGSQVSHAGIYVGEGRFVHAPATGGTVKLDSLDKPYW
QRAYLNAKRVIQPSSLAQNRP
>Mature_180_residues
SIALRLLVISVAALLGACASAPPPPKAPRIVQRPVVTAPPQILSPAAEDVLFRALGLVGTPYRWGGNTPDSGFDCSGLIG
YVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFFATSGGSQVSHAGIYVGEGRFVHAPATGGTVKLDSLDKPYWQ
RAYLNAKRVIQPSSLAQNRP

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=135, Percent_Identity=43.7037037037037, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=36.5671641791045, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1788501, Length=177, Percent_Identity=36.7231638418079, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1788001, Length=111, Percent_Identity=41.4414414414414, Blast_Score=90, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 19209; Mature: 19078

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIALRLLVISVAALLGACASAPPPPKAPRIVQRPVVTAPPQILSPAAEDVLFRALGLVG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCHHHHHHHHHHHHHCC
TPYRWGGNTPDSGFDCSGLIGYVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFF
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE
ATSGGSQVSHAGIYVGEGRFVHAPATGGTVKLDSLDKPYWQRAYLNAKRVIQPSSLAQNR
EECCCCCEEECEEEEECCEEEECCCCCCEEEECCCCCHHHHHHHHCHHHCCCCHHHCCCC
P
C
>Mature Secondary Structure 
SIALRLLVISVAALLGACASAPPPPKAPRIVQRPVVTAPPQILSPAAEDVLFRALGLVG
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCHHHHHHHHHHHHHCC
TPYRWGGNTPDSGFDCSGLIGYVYRDAAGISLPRSTREMIVMGAPNIRREQLQSGDLVFF
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE
ATSGGSQVSHAGIYVGEGRFVHAPATGGTVKLDSLDKPYWQRAYLNAKRVIQPSSLAQNR
EECCCCCEEECEEEEECCEEEECCCCCCEEEECCCCCHHHHHHHHCHHHCCCCHHHCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]