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The map label for this gene is spr [H]

Identifier: 66046913

GI number: 66046913

Start: 4370634

End: 4371362

Strand: Reverse

Name: spr [H]

Synonym: Psyr_3684

Alternate gene names: 66046913

Gene position: 4371362-4370634 (Counterclockwise)

Preceding gene: 66046914

Following gene: 66046912

Centisome position: 71.74

GC content: 59.53

Gene sequence:

>729_bases
ATGCAAGTTGTTCGCTTCGCACCCCTCGTGCCTCTCGCACTCGTTACATTTCTCTTCGGTTGCTCGGCCAATATGCCGGT
CGCACAGCAGGAACAGGCCCAGCCAGTTCCACGCTATCAGAGCGCAATCAATGCCAATGCCCAGTCCGCAGCCCGTCGCG
CCGACGCGGCAGTCCTGCAGGACGAGCTCGCTACCGAAGACGAACTGTCCCAGTTCGCTGATAACAAGTCTTACCAACTG
CCGGCCCTGGCCGACAGCATCCTGGAGCGTGGCAAGTCGCTGATCGGCACCCGCTACAAGTTCGGCGGCACGTCGACTTC
TTCGGGTTTCGATTGCAGCGGCTTCATCGGTTATCTGTTTCGCGAAGAGGCCGGCATGAGCCTGCCACGTTCCACGCGTG
AAATGATCAACGTCAACGCACCTCTGGTAGCGCGCAACAAGCTTCAGCCGGGTGATGTGCTGTTCTTCAGTACTCGCGGT
CGTGGTCAGGTCAGCCACGCAGCGATTTACGCCGGTAATCGGCAGTTCATCCACTCCAGCAGTCGCCGCAGCGGCGGTGT
GCGCATCGACAGCCTCGATGACGCCTACTGGAGCAAGACCTTCATCGAGGCCAAGCGGCCTCTGGCGATGGCCCCGGGTA
CTGTTGCAGTAAAATCGACACCTGAAGTCACGCAGACAACGGCGATGACTTCGACTACAGTCAAGACCGCGCCCAAGCGG
CGTAAATAA

Upstream 100 bases:

>100_bases
GGCAGAACTCATAAGTCACATCTAGTTCGATTGAATTTGCAAATCACCTTCATAAAAGGCATAGTCTCGCCATCTTAACT
AGTCAGCCACGGTTGTGCCC

Downstream 100 bases:

>100_bases
ATAGAACGCGCAGCACAAGACCTTCGGGTCTTTATGCGTTTTTGAGCTTCTCGGCAGCGTAAGCCGCATCCGGATAGGTT
GTTGTGGTTATGTCGATTGC

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVPRYQSAINANAQSAARRADAAVLQDELATEDELSQFADNKSYQL
PALADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLFREEAGMSLPRSTREMINVNAPLVARNKLQPGDVLFFSTRG
RGQVSHAAIYAGNRQFIHSSSRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVKSTPEVTQTTAMTSTTVKTAPKR
RK

Sequences:

>Translated_242_residues
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVPRYQSAINANAQSAARRADAAVLQDELATEDELSQFADNKSYQL
PALADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLFREEAGMSLPRSTREMINVNAPLVARNKLQPGDVLFFSTRG
RGQVSHAAIYAGNRQFIHSSSRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVKSTPEVTQTTAMTSTTVKTAPKR
RK
>Mature_242_residues
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVPRYQSAINANAQSAARRADAAVLQDELATEDELSQFADNKSYQL
PALADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLFREEAGMSLPRSTREMINVNAPLVARNKLQPGDVLFFSTRG
RGQVSHAAIYAGNRQFIHSSSRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVKSTPEVTQTTAMTSTTVKTAPKR
RK

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=207, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=37.7049180327869, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788001, Length=131, Percent_Identity=40.4580152671756, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786421, Length=150, Percent_Identity=32.6666666666667, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 26286; Mature: 26286

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVPRYQSAINANAQSAARRADAAVLQ
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHH
DELATEDELSQFADNKSYQLPALADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLF
HHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
REEAGMSLPRSTREMINVNAPLVARNKLQPGDVLFFSTRGRGQVSHAAIYAGNRQFIHSS
HHHCCCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECCHHEEECC
SRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVKSTPEVTQTTAMTSTTVKTAPKR
CCCCCCEEECCCCCHHHHHHHHHHCCCEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCC
RK
CC
>Mature Secondary Structure
MQVVRFAPLVPLALVTFLFGCSANMPVAQQEQAQPVPRYQSAINANAQSAARRADAAVLQ
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHH
DELATEDELSQFADNKSYQLPALADSILERGKSLIGTRYKFGGTSTSSGFDCSGFIGYLF
HHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
REEAGMSLPRSTREMINVNAPLVARNKLQPGDVLFFSTRGRGQVSHAAIYAGNRQFIHSS
HHHCCCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCEEEEEECCHHEEECC
SRRSGGVRIDSLDDAYWSKTFIEAKRPLAMAPGTVAVKSTPEVTQTTAMTSTTVKTAPKR
CCCCCCEEECCCCCHHHHHHHHHHCCCEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]