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The map label for this gene is ybaV [C]

Identifier: 66046864

GI number: 66046864

Start: 4316446

End: 4316808

Strand: Reverse

Name: ybaV [C]

Synonym: Psyr_3635

Alternate gene names: 66046864

Gene position: 4316808-4316446 (Counterclockwise)

Preceding gene: 66046865

Following gene: 66046862

Centisome position: 70.84

GC content: 56.2

Gene sequence:

>363_bases
ATGCGAACCCCTATCTTCAGTGCCTTGATCTTTGCCTTGCTCACCAGTGCCTCGGTTGTGGTCAACGCCGCCCCTGCGTC
TCAGCCCGCCATGTCAGAGCCCGCGGTATCCCATTCGCCGATGCTGGAAGGCACAGCGCCCGCTATGGCGCATGAGCAAC
GCAAGGACAGGGTCAATCTCAATACTGCCGATGCGCAGACACTGCAGAAAGAACTGGCGGGAATCGGCAAGAACAAGGCT
GATGCCATTGTGGCTTACCGGGAAGCCAACGGCGATTTTACGTCGATTGATGAACTGATCGAGGTAAAGGGAATCGGCAA
GGCCATTCTGGAGAGGAATCGCGAAAAGCTTGCAATCGACTGA

Upstream 100 bases:

>100_bases
CAGGCAGCAACGCTCAACTGCTTTTCCAAGGGGGGACGCTGGTCTAAGTTTCAGGCACAGCATGTGGAATGCTGCCTTGA
ACTGCTATGGAGCTTTATCT

Downstream 100 bases:

>100_bases
TCAGCGTTTCATCCGTTAAACACACAGGCCGATCAATGATCGGCCTGTGTGTTTATAAACTCTCGCCGGGAAGCTTCCCG
GGAAAGTATCTGTTCCAGAG

Product: competence protein ComEA helix-hairpin-helix region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MRTPIFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTAPAMAHEQRKDRVNLNTADAQTLQKELAGIGKNKA
DAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAID

Sequences:

>Translated_120_residues
MRTPIFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTAPAMAHEQRKDRVNLNTADAQTLQKELAGIGKNKA
DAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAID
>Mature_120_residues
MRTPIFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTAPAMAHEQRKDRVNLNTADAQTLQKELAGIGKNKA
DAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAID

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=67, Percent_Identity=41.7910447761194, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12800; Mature: 12800

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPIFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTAPAMAHEQRKDRVNL
CCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
NTADAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAID
CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCHHCCCC
>Mature Secondary Structure
MRTPIFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTAPAMAHEQRKDRVNL
CCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
NTADAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAID
CCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]