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The map label for this gene is glxA [H]

Identifier: 66046795

GI number: 66046795

Start: 4247934

End: 4248989

Strand: Reverse

Name: glxA [H]

Synonym: Psyr_3566

Alternate gene names: 66046795

Gene position: 4248989-4247934 (Counterclockwise)

Preceding gene: 66046796

Following gene: 66046794

Centisome position: 69.73

GC content: 63.26

Gene sequence:

>1056_bases
ATGTTCCAGATCGAGCTATCTTCCAAGGCTCGGCTTTTGCGGCAATACGTATCGGATCTCCCAATGACTGCCCATCGAAT
AGGTTTCCTCGTCTGGCCTGGCACCAGAGCCCTGACCCTGGCACTGGCCGAGGAAGCCTTGCGCGTTGCGCAGCGGGTTC
ACCCTGAAGTGGTCTATGAGCTGTCGTTTCTACAGGCCGAGGCCGCGGAGCCAGCGGCGCTTGCCGGTGCGTGGCAGTTG
CCGGGTGAGCCCTGGGTCGGGCGACTGGAGGGCTTTCAGAAGCTGTTTTTACTGGCTGACGAACCTCCGGCGGGCGTGGC
CCCGGCGCTGGGCAGTGCACTCAAGCAACTGGTGCGTGCCGGCTGTTCGATTGGCGGGCTGTCGGCGGGCGTCTACCCGC
TTGCGCAACTGGGCCTGCTGGATGGCTACCGTGCCGCCGTGCACTGGCGCTGGCAGGACGACTTCGCCGAGCGCTTCCCC
AAGGTCATCGCCACCAGCCATTTGTTCGATTGGGATCGGGATCGCCTGACCGCCTGTGGTGGCATGTCGGTGCTCGACCT
GCTGCTGGCGGTGCTGTCCCGCGACCATGGGGCCGAACTGGCCGGGGCGGTTTCCGAAGAGCTGGTGGTCGAGCGCATTC
GCGAAGGCGGCGAGCGTCAGCGCATTCCGCTGCAGAACCGTCTGGGCTCCAGCCATCCCAAGCTGACCCAGGCGGTGCTG
CTGATGGAAGCCAATATCGAAGAGCCGTTGACCACCGACGAAATCGCCCAGCACGTGTGCGTGTCTCGTCGCCAACTGGA
GCGGATCTTCAAGCAGTACCTCAACCGTGTGCCCAGCCAGTATTACCTGGAACTGCGCTTGAACAAGGCGCGCCAGATGT
TGATGCAGACCAGCAAGTCGATCATTCAGATCGGCCTTTCGTGCGGTTTTTCCTCGGGGCCGCACTTCTCCAGCGCCTAC
CGCAATTTCTTCGGTGCCACGCCGCGTGAAGACCGCAATCAGCGACGCAGCAGCAGCCCGTTCGAACTTTCCCCTGTGCC
TGCCGAACGCGGTTGA

Upstream 100 bases:

>100_bases
GCAATTCCTGTCCGGCAGCCTGAAGTGACGATCGGCAGCGCATGACGATGCCTTTTTATGCCAGAACAGGGCATGCTGCG
CGACGCGCGACACGACCTGG

Downstream 100 bases:

>100_bases
TTGTCTTGTCGCGATAGAAGTGCTGCCGCGACAGCTCAGGTCCAGACAGGCCGGCTTCAATCCGTTTAAACTGCGCCTTT
GTGACGCAAATTGTCGCATT

Product: helix-turn-helix, AraC type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MFQIELSSKARLLRQYVSDLPMTAHRIGFLVWPGTRALTLALAEEALRVAQRVHPEVVYELSFLQAEAAEPAALAGAWQL
PGEPWVGRLEGFQKLFLLADEPPAGVAPALGSALKQLVRAGCSIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFP
KVIATSHLFDWDRDRLTACGGMSVLDLLLAVLSRDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVL
LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAY
RNFFGATPREDRNQRRSSSPFELSPVPAERG

Sequences:

>Translated_351_residues
MFQIELSSKARLLRQYVSDLPMTAHRIGFLVWPGTRALTLALAEEALRVAQRVHPEVVYELSFLQAEAAEPAALAGAWQL
PGEPWVGRLEGFQKLFLLADEPPAGVAPALGSALKQLVRAGCSIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFP
KVIATSHLFDWDRDRLTACGGMSVLDLLLAVLSRDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVL
LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAY
RNFFGATPREDRNQRRSSSPFELSPVPAERG
>Mature_351_residues
MFQIELSSKARLLRQYVSDLPMTAHRIGFLVWPGTRALTLALAEEALRVAQRVHPEVVYELSFLQAEAAEPAALAGAWQL
PGEPWVGRLEGFQKLFLLADEPPAGVAPALGSALKQLVRAGCSIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFP
KVIATSHLFDWDRDRLTACGGMSVLDLLLAVLSRDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVL
LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAY
RNFFGATPREDRNQRRSSSPFELSPVPAERG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=112, Percent_Identity=33.9285714285714, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790559, Length=109, Percent_Identity=30.2752293577982, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39023; Mature: 39023

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQIELSSKARLLRQYVSDLPMTAHRIGFLVWPGTRALTLALAEEALRVAQRVHPEVVYE
CEEEECCHHHHHHHHHHHHCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHH
LSFLQAEAAEPAALAGAWQLPGEPWVGRLEGFQKLFLLADEPPAGVAPALGSALKQLVRA
HHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHC
GCSIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACG
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCC
GMSVLDLLLAVLSRDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHH
LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKS
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHH
IIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSPVPAERG
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFQIELSSKARLLRQYVSDLPMTAHRIGFLVWPGTRALTLALAEEALRVAQRVHPEVVYE
CEEEECCHHHHHHHHHHHHCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHH
LSFLQAEAAEPAALAGAWQLPGEPWVGRLEGFQKLFLLADEPPAGVAPALGSALKQLVRA
HHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHC
GCSIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACG
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCC
GMSVLDLLLAVLSRDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHH
LMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKS
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHH
IIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSPVPAERG
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]