Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 66046775

GI number: 66046775

Start: 4223650

End: 4224558

Strand: Direct

Name: yqhC [H]

Synonym: Psyr_3546

Alternate gene names: 66046775

Gene position: 4223650-4224558 (Clockwise)

Preceding gene: 66046772

Following gene: 66046778

Centisome position: 69.31

GC content: 61.28

Gene sequence:

>909_bases
ATGGACAATCAACTCAATGAACTGCGGCTGCTCGCGGCCAAGGCTGAAAATCGCCGTACTGAAACAGGCATACCTCGTGT
GGCCATGGTTCAAGGCAAAATCCCCGAGCATATGCTGGCAGCGGTCTACGACCCGATGATCAATGTGATCCTGCAAGGCA
GCAAGCACATGACCGTCGGTGACAGCACGCTCGAATATGACCCGGCGACCTACTTCGTCATGTCCATCGACCTGCCTGCC
GTGGGCTCGGTACACCCCGCCAGGTCCGGAGAACCCTATCTGGCGGTCAGCCTGACGCTGGATCCTGCGGTGTTATCCAC
ACTGTTCGCCGACTTGCCCAAACCTGCCAGCCGCCTCGAGAACAGGCCCGGGTTTTCAGTGGCGCCGATGACCACCGAAC
TGATGGATGCGTGGGTGCGAATGCTGCGCCTGATGGGCGACCCGGACGCCATCGCCGCGCTGGCGCCGGTCTACGAACGG
GAGATTATCTTCCGGGTACTTCAAGGGCCTCATGGCTGGATGCTCCGCGAGATCGCCGCATCGGATACTGCGATGGCCAG
AGTCAACATGTCGATCCAGTGGATCCGCCGCGACTTCGCTGAGCCGTTAGGCGTGGAGCGCCTGGCGGAACGCGCGTCGA
TGAGCGTTTCGGCGTTTCATCGCCACTTCAAGGCCGTGACCAACCTGAGCCCTTTGCAGTACCAGAAGCGGGTACGCCTG
CTGCACGCCAGAACGCTGATGGTGGCCAACGCCAAAAGTGTCATGGCGGCAGCCTTCGAGGTGGGCTATGAAAGCGCCAC
GCAATTCAGTCGGGATTATTCGAGGGTGTTCGGACTTCCCCCGGCCCAGGATGCCGGGCGGATCCTCGAGGCTACGAGGG
GCGCGGCAGTTAATCAGCCTCTCGCCTGA

Upstream 100 bases:

>100_bases
CCCAGCGCCATCACCGGGAGCGTACCCGTTCCTGCTCGAAACCTGCCTGTTTCTGCTTTTCGCTTGCGCGGCGCCATGCC
CAGCCCTCAGCATGCGAAGC

Downstream 100 bases:

>100_bases
TGGACGCAGAGCGGCGGGCCTCTAGGCCGGCAGCGGCCCGCAGGCACGATAGGTGTCGATCAACGTGTCAAAAAGGGAAA
TATCCGACCTGCTTCTGGCA

Product: helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVGDSTLEYDPATYFVMSIDLPA
VGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLENRPGFSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYER
EIIFRVLQGPHGWMLREIAASDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVRL
LHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAGRILEATRGAAVNQPLA

Sequences:

>Translated_302_residues
MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVGDSTLEYDPATYFVMSIDLPA
VGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLENRPGFSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYER
EIIFRVLQGPHGWMLREIAASDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVRL
LHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAGRILEATRGAAVNQPLA
>Mature_302_residues
MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVGDSTLEYDPATYFVMSIDLPA
VGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLENRPGFSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYER
EIIFRVLQGPHGWMLREIAASDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVRL
LHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAGRILEATRGAAVNQPLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=293, Percent_Identity=33.1058020477816, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=30, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33357; Mature: 33357

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEC
DSTLEYDPATYFVMSIDLPAVGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCHHHHHC
NRPGFSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYEREIIFRVLQGPHGWMLREIAA
CCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVRL
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAGRILEATRGAAVNQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
LA
CC
>Mature Secondary Structure
MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEC
DSTLEYDPATYFVMSIDLPAVGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLE
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCHHHHHC
NRPGFSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYEREIIFRVLQGPHGWMLREIAA
CCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVRL
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAGRILEATRGAAVNQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
LA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]