| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ygfF [C]
Identifier: 66046774
GI number: 66046774
Start: 4222768
End: 4223511
Strand: Reverse
Name: ygfF [C]
Synonym: Psyr_3545
Alternate gene names: 66046774
Gene position: 4223511-4222768 (Counterclockwise)
Preceding gene: 66046776
Following gene: 66046773
Centisome position: 69.31
GC content: 61.83
Gene sequence:
>744_bases ATGGGCGTCATCGTAATCACTGGCGGCAGCCGTGGCATCGGCGCAAGTGCAGCCGAACACGTGGCTCGACGCGGGATGGG GGTCATCCTTACCTACAACGCCAACCCGGAGGCCGCCGCAACGGTGGTCGAGCGTATCGCGCAGGCCGGTGGCAAGGCAG TTGCGCTCAGGCTGGATGTCGCTGACGTCGGCAGCTTCGAGGCGTTTCGAGCGTCAGTGTGCTCGGTCCTGCAAGAAGTC TGGGGCGTCGCAACACTGAGCGGTCTGGTCAATAACGCGGGTTACGGGCTGTTCAATCCGTTGGAGACGGTCAGCGAAGC GCAGTTCGATGGCCTGTTCAATGTGCATCTCAAAGGCCCTTTTTTCCTCACCCAGACATTGCTGCCGTTGATGGCGGAAA ACGCCAGCATCGTCAATCTGACCAGTGCCACCACTCGCGTCGCCACTGCGGGGGTCGCTCCCTATGCGGCGTTCAAGGGC GGGCTTGAAGTCTTGACCCGCTATATGGCTGTCGAGTTTGGCGAGCGGCGCATAAGGGCCAACGCCGTATCACCCGGCGC CATTCGTACCGAACTGGGCGGTGGGCTCAATGATGAGTTCGAGGCGATGCTGGCAGCACAGACGGCCTTGGGCAGGGTCG GCGAGCCGCAAGATGTGGCACGCGTCATCGCCATGCTGCTGTCCGAAGAGGCTGGCTGGATCAATGCGCAGACTATCGAA GTCGCAGGCGGCTACAACATCTGA
Upstream 100 bases:
>100_bases CGAAAAGCAGAAACAGGCAGGTTTCGAGCAGGAACGGGTACGCTCCCGGTGATGGCGCTGGGTACTGTGGAGACACATTC AAACCACAGAGGAACATCAC
Downstream 100 bases:
>100_bases GGGCGACCCATGCTCGATCATAGCGTTCTACGCGCAACAGCCGTTCTGTACCCCGATGGCTACAGCCCCGACTTCGTCTC GAAAAAAAGGCAGCACGTCC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MGVIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDVADVGSFEAFRASVCSVLQEV WGVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGPFFLTQTLLPLMAENASIVNLTSATTRVATAGVAPYAAFKG GLEVLTRYMAVEFGERRIRANAVSPGAIRTELGGGLNDEFEAMLAAQTALGRVGEPQDVARVIAMLLSEEAGWINAQTIE VAGGYNI
Sequences:
>Translated_247_residues MGVIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDVADVGSFEAFRASVCSVLQEV WGVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGPFFLTQTLLPLMAENASIVNLTSATTRVATAGVAPYAAFKG GLEVLTRYMAVEFGERRIRANAVSPGAIRTELGGGLNDEFEAMLAAQTALGRVGEPQDVARVIAMLLSEEAGWINAQTIE VAGGYNI >Mature_246_residues GVIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDVADVGSFEAFRASVCSVLQEVW GVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGPFFLTQTLLPLMAENASIVNLTSATTRVATAGVAPYAAFKGG LEVLTRYMAVEFGERRIRANAVSPGAIRTELGGGLNDEFEAMLAAQTALGRVGEPQDVARVIAMLLSEEAGWINAQTIEV AGGYNI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=27.9352226720648, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=30.6772908366534, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=32.2709163346614, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=9e-18, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=25.8064516129032, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4503301, Length=233, Percent_Identity=26.6094420600858, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=30.0395256916996, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=25.0936329588015, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI59889578, Length=170, Percent_Identity=32.3529411764706, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI33667109, Length=209, Percent_Identity=32.5358851674641, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=32.6848249027237, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.6065573770492, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=7e-24, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=30.8943089430894, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=32.0987654320988, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=26.8292682926829, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786701, Length=198, Percent_Identity=32.3232323232323, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=28.6821705426357, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=24.8979591836735, Blast_Score=68, Evalue=5e-13, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=28.5140562248996, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.2, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=30.7984790874525, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=26.8, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=27.8884462151394, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=28.3464566929134, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=28.740157480315, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=26.984126984127, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=28.2868525896414, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=29.5019157088123, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17561272, Length=214, Percent_Identity=28.5046728971963, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=28.957528957529, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=27.1653543307087, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=29.0697674418605, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.3893129770992, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=30.2564102564103, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=33.0645161290323, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=33.852140077821, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=33.8645418326693, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.2709163346614, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=29.2490118577075, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=28.968253968254, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24644337, Length=169, Percent_Identity=34.9112426035503, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25699; Mature: 25567
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDV CEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEH ADVGSFEAFRASVCSVLQEVWGVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGP HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEECCC FFLTQTLLPLMAENASIVNLTSATTRVATAGVAPYAAFKGGLEVLTRYMAVEFGERRIRA HHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NAVSPGAIRTELGGGLNDEFEAMLAAQTALGRVGEPQDVARVIAMLLSEEAGWINAQTIE CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE VAGGYNI ECCCCCC >Mature Secondary Structure GVIVITGGSRGIGASAAEHVARRGMGVILTYNANPEAAATVVERIAQAGGKAVALRLDV EEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEH ADVGSFEAFRASVCSVLQEVWGVATLSGLVNNAGYGLFNPLETVSEAQFDGLFNVHLKGP HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEECCC FFLTQTLLPLMAENASIVNLTSATTRVATAGVAPYAAFKGGLEVLTRYMAVEFGERRIRA HHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NAVSPGAIRTELGGGLNDEFEAMLAAQTALGRVGEPQDVARVIAMLLSEEAGWINAQTIE CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE VAGGYNI ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]