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The map label for this gene is ydfH [C]

Identifier: 66046759

GI number: 66046759

Start: 4206425

End: 4207144

Strand: Reverse

Name: ydfH [C]

Synonym: Psyr_3530

Alternate gene names: 66046759

Gene position: 4207144-4206425 (Counterclockwise)

Preceding gene: 66046765

Following gene: 66046758

Centisome position: 69.04

GC content: 63.06

Gene sequence:

>720_bases
ATGATCCGACCTGACAGTGCCCCGTTGTTTCTCACGCCTTCTGCCGCTGAAAAGGGCCGTGATGAACAGATTTACCAGCA
TGTCCTGGAAGCCATCGTCGAACACCGGCTCGCTCCGGGAACGCGCTTGCCCGAGGACGCCCTGGCCGACGTATTCGAGA
TCAGCCGCACCGGCATTCGCAAGGTCTTGCAGCGTCTGGCGCTGGAACGGCTGGTGACCCTGCGCCCCAAGCGCGGCGCG
GAGGTCGCGCAACCGTCGGCTCAGGAAGCACAGGATGTATTGGGTGCCAGGCAACTGATCGAGCCCGCGCTGATGGCCGA
GATCGCCACGCGAGTCGGCGGCCGGCGTCTGGATGCACTGCGTGCGCTTTGCGATCAGGAGCATGAGGCGCAACACGCGG
GGCGCCACAGCGAAGCGATTCAACTGTCGGCGCGCTTTCATGTGCAGTTGAGCGCGCTGGCGGGCAATCAGGTGTTGACC
GAACAGGTCGCGCAGCTCACCACGCGATCCTCGTTGATTGTTGCGGTGTACGGTTCGCGACGCAGTGTCGGGTGTGATTG
TGGCCAGCATGTCGACTTGCTGGCCTTGCTCGAAAGCGGGCAGGGCGAACAGGCGCGCGAATGGATGGCCGAGCATTTGC
GCCGCATCCGCGCCAGCCTGAATGTGGATGCGCCGCTCAGCGAGACAGTGGATTTTCATAGCATTTTCAAACGGCGCTGA

Upstream 100 bases:

>100_bases
AATGGCTATTTGGCCTGTTATTCAAATCGCGCTACTCATCATGTTCCGTATCAGGCACTATTCTTGTATACGATCTGTAA
TGCCAATGTGATGTGAATCC

Downstream 100 bases:

>100_bases
AGGAGTTCCGGTGCGTATTCAAGTGATCAACCCCAATACCAGCGAAGCCATGACCCACAAGATCGGTCTGGCCGCGCAAG
CCGTGGCGCGCCCAGGCACA

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein GntR Family; FCD Domain Protein; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; GntR Family Transcription Regulator Protein; L-Asparagine Operon Transcriptional Regulator; GntR Family Regulatory; Transcriptional Regulatory Protein GntR Family; Transcription Regulator HTH GntR; Regulatory Protein; Bacterial Regulatory Protein; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator; Transcription Regulator Protein; GntR Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIRPDSAPLFLTPSAAEKGRDEQIYQHVLEAIVEHRLAPGTRLPEDALADVFEISRTGIRKVLQRLALERLVTLRPKRGA
EVAQPSAQEAQDVLGARQLIEPALMAEIATRVGGRRLDALRALCDQEHEAQHAGRHSEAIQLSARFHVQLSALAGNQVLT
EQVAQLTTRSSLIVAVYGSRRSVGCDCGQHVDLLALLESGQGEQAREWMAEHLRRIRASLNVDAPLSETVDFHSIFKRR

Sequences:

>Translated_239_residues
MIRPDSAPLFLTPSAAEKGRDEQIYQHVLEAIVEHRLAPGTRLPEDALADVFEISRTGIRKVLQRLALERLVTLRPKRGA
EVAQPSAQEAQDVLGARQLIEPALMAEIATRVGGRRLDALRALCDQEHEAQHAGRHSEAIQLSARFHVQLSALAGNQVLT
EQVAQLTTRSSLIVAVYGSRRSVGCDCGQHVDLLALLESGQGEQAREWMAEHLRRIRASLNVDAPLSETVDFHSIFKRR
>Mature_239_residues
MIRPDSAPLFLTPSAAEKGRDEQIYQHVLEAIVEHRLAPGTRLPEDALADVFEISRTGIRKVLQRLALERLVTLRPKRGA
EVAQPSAQEAQDVLGARQLIEPALMAEIATRVGGRRLDALRALCDQEHEAQHAGRHSEAIQLSARFHVQLSALAGNQVLT
EQVAQLTTRSSLIVAVYGSRRSVGCDCGQHVDLLALLESGQGEQAREWMAEHLRRIRASLNVDAPLSETVDFHSIFKRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=26.1083743842365, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26450; Mature: 26450

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPDSAPLFLTPSAAEKGRDEQIYQHVLEAIVEHRLAPGTRLPEDALADVFEISRTGIR
CCCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
KVLQRLALERLVTLRPKRGAEVAQPSAQEAQDVLGARQLIEPALMAEIATRVGGRRLDAL
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RALCDQEHEAQHAGRHSEAIQLSARFHVQLSALAGNQVLTEQVAQLTTRSSLIVAVYGSR
HHHHCHHHHHHHCCCCHHHEEEHHHHEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEECCC
RSVGCDCGQHVDLLALLESGQGEQAREWMAEHLRRIRASLNVDAPLSETVDFHSIFKRR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRPDSAPLFLTPSAAEKGRDEQIYQHVLEAIVEHRLAPGTRLPEDALADVFEISRTGIR
CCCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
KVLQRLALERLVTLRPKRGAEVAQPSAQEAQDVLGARQLIEPALMAEIATRVGGRRLDAL
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RALCDQEHEAQHAGRHSEAIQLSARFHVQLSALAGNQVLTEQVAQLTTRSSLIVAVYGSR
HHHHCHHHHHHHCCCCHHHEEEHHHHEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEECCC
RSVGCDCGQHVDLLALLESGQGEQAREWMAEHLRRIRASLNVDAPLSETVDFHSIFKRR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA