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The map label for this gene is bphB [H]

Identifier: 66046733

GI number: 66046733

Start: 4177750

End: 4179987

Strand: Reverse

Name: bphB [H]

Synonym: Psyr_3504

Alternate gene names: 66046733

Gene position: 4179987-4177750 (Counterclockwise)

Preceding gene: 66046734

Following gene: 66046728

Centisome position: 68.6

GC content: 59.43

Gene sequence:

>2238_bases
ATGAGCCAACTCGACAAAGACGCCTTTGAAGTCCTTCTGGCCAATTGTGCGGATGAGCCCATTCAGTTTCCCGGCGCCAT
TCAACCCCATGGCCTGCTGTTTACCCTTGCAGAGCCCGAGCTGACGATCCTGCAAGTCAGCGCCAACGTGCAGACTGTGC
TGGGTCATGTGCCCGAGCAGTTGCTCGGCAAGGGGCTGGACTGTGTGCTGGGCGCTGGCTGGGCCGAGGTGATCAGAAGC
GCCAGTGCCCATGATTCGTTCATCGACGCGCAACGCCTGCTGATGTCGATCAACGGCATCGAGTTCGAAGCCTTGTTACA
CCGTCATCAGGGCGTTCTGGTGCTGGAACTCGAAATTCAGGGCAAGGATGCGCAGTCGGTGAGTTATTCCGAGCGCACCG
GCAACATGGGTCGCATGTTGCGTCAACTGCACGCTGCGAGTGATCTGCAGACCCTGTATGAAGTCAGTGTCCGCGAGATC
CAGAAAATGACCGGTTACGACCGGGTGCTGATCTACCGCTTCGAAGAGGAGGGCCATGGCCAGGTGATCGCCGAAGCGTC
GGCGCCGTCCATGGAGCTTTTCAACGGTCTGTTTTTCCCGGCATCGGACATTCCCGAGCAGGCACGCGAACTGTATCGCC
GCAACTGGCTGCGCATTATTCCCGATGCCGATTACATCCCGGTGCCCCTGGTGCCTCAACTGCGCCCGGACACTCAGCAG
CAGCTTGATCTGAGTTTTTCGACGTTGCGCAGTGTTTCACCGATCCACTGCCAGTACATGAAGAACATGGGCGTGCTGTC
GTCCATGAGTGTGTCGCTGATTCAGAGCGGCAAGTTGTGGGGATTGATCAGTTGCGGCAACCGCACGCCGCTGTACGTGT
CTCACGAGTTGCGCAGTGCCTGCCAGGCGATAGGCCAGGTGCTGTCGCTGCAGATCAGCGCCATGGAAGCGCTGGAAATA
AGCCGTCAGCGAGAGGCGAAGGTCAGGGCGCTCGAGCAATTGAATCTGGCCATGGCCGGGTCCGAAGAAAACGTCTTCGA
TGGCCTGGCGCAGCAACCCCAGTTGTTGATGGATCTGGTCGGCGCGACCGGCGTCGCCATCATCGAAGACCGGCAAACGC
ATTGTTTCGGCATCTGCCCTGAGCCGTCCGACATACGTGCATTGCATGCCTGGATGATCGCTGGTGGCGAACCAGTGTAT
GCCAGTCATCATCTATCCAGTGTCTATGCGCCTGCCGAGGCTTATCAGCCAGTCGCCAGCGGCGTATTGGCGATGAGCCT
GCCAAAGCCGGTCGACAATGGCGTTATCTGGTTTCGTCCCGAGGTCAAGGAAACGGTCCAGTGGAGCGGTGATCCTAAAA
AGCCATTGAACATGGAAAGCTCGGCGGGCGGCATGCGTCTTCGGCCGCGTACCTCGTTTGAGATCTGGAAGGTCGAGATG
ACCGGGATCGCTACGAAGTGGAGCTACGGCGATGTGTTCGCCGCCAATGACCTGCGCCGCTCCGCCCTGGAAAATGACCT
CGCCCGTCAGGTGCGCAGGGAGCAACAGGCTGTTCGCGCGCGTGACGAGCTGGTAGCGGTCGTGTCCCATGACTTGCGTA
ACCCGATGACGGTCATTTCCATGCTCTGCGGGATGATGCAGAAGTCGTTCAGCTCCGATGGGCCGCATACGTCGCGACGT
ATTTCCACGGCAATCGATACCATGCAGCAAGCGGCCAGCCGCATGAATGTGTTACTCGAAGACCTGCTCGACACCTCGAA
AATCGAAGCGGGCCGCTACACGATTACGCCGCAGCCACTGGAAGTCAGCCAGATATTCGAGGAGGCCTATACCTTGCTGG
CCCCGCTGGCGATGGACAAATCCATCGAGATCTCCTTCAACGCCGAGCCTGACCTCAAGGTGCAGGCCGACCCGGAGCGT
CTTTTCCAGGTGCTGTCCAACCTGATCGGCAACGCCATCAAGTTCACCCCGAAAATGGGTACGATCGGTGTGGCGGCAAT
GTCCAACGGCACTGAAATCGTATTCACCGTACGGGACTCCGGCGAGGGCATCCCTCCCGAGCAGTTGCCACACATCTTCG
AGCGCTACTGGACCGTCAAGGAAGGCAACCCGACCGGCACCGGCCTGGGCCTGTACATCTCCCAGGGCATCATCAAGGCC
CACGGCGGCGAACTGGCTGCGCAAAGCCAGGTGGGCGAGGGCAGCGAGTTCCGCTTCACGGTGCCAATGGCGGTTTGA

Upstream 100 bases:

>100_bases
AAGTGTCGCGGGAAGTTGCTTTTAATGATGCTGCCGCGTTTGCAGCGCACTCCACATTTGCATGTTTCGAGCACTGGCTC
GAGGGTCAAAAGGTACTGTT

Downstream 100 bases:

>100_bases
TCGCTTGCTCAGGCTTGCAGTGAGTTTCAACTCAAGCCTGAGTTGCATCAGCCCTGATGCCAGTTGGTAGTCCTTTCGAT
GTATTCAACGTTCGCTGGAA

Product: GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 745; Mature: 744

Protein sequence:

>745_residues
MSQLDKDAFEVLLANCADEPIQFPGAIQPHGLLFTLAEPELTILQVSANVQTVLGHVPEQLLGKGLDCVLGAGWAEVIRS
ASAHDSFIDAQRLLMSINGIEFEALLHRHQGVLVLELEIQGKDAQSVSYSERTGNMGRMLRQLHAASDLQTLYEVSVREI
QKMTGYDRVLIYRFEEEGHGQVIAEASAPSMELFNGLFFPASDIPEQARELYRRNWLRIIPDADYIPVPLVPQLRPDTQQ
QLDLSFSTLRSVSPIHCQYMKNMGVLSSMSVSLIQSGKLWGLISCGNRTPLYVSHELRSACQAIGQVLSLQISAMEALEI
SRQREAKVRALEQLNLAMAGSEENVFDGLAQQPQLLMDLVGATGVAIIEDRQTHCFGICPEPSDIRALHAWMIAGGEPVY
ASHHLSSVYAPAEAYQPVASGVLAMSLPKPVDNGVIWFRPEVKETVQWSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEM
TGIATKWSYGDVFAANDLRRSALENDLARQVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRR
ISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDLKVQADPER
LFQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKA
HGGELAAQSQVGEGSEFRFTVPMAV

Sequences:

>Translated_745_residues
MSQLDKDAFEVLLANCADEPIQFPGAIQPHGLLFTLAEPELTILQVSANVQTVLGHVPEQLLGKGLDCVLGAGWAEVIRS
ASAHDSFIDAQRLLMSINGIEFEALLHRHQGVLVLELEIQGKDAQSVSYSERTGNMGRMLRQLHAASDLQTLYEVSVREI
QKMTGYDRVLIYRFEEEGHGQVIAEASAPSMELFNGLFFPASDIPEQARELYRRNWLRIIPDADYIPVPLVPQLRPDTQQ
QLDLSFSTLRSVSPIHCQYMKNMGVLSSMSVSLIQSGKLWGLISCGNRTPLYVSHELRSACQAIGQVLSLQISAMEALEI
SRQREAKVRALEQLNLAMAGSEENVFDGLAQQPQLLMDLVGATGVAIIEDRQTHCFGICPEPSDIRALHAWMIAGGEPVY
ASHHLSSVYAPAEAYQPVASGVLAMSLPKPVDNGVIWFRPEVKETVQWSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEM
TGIATKWSYGDVFAANDLRRSALENDLARQVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRR
ISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDLKVQADPER
LFQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKA
HGGELAAQSQVGEGSEFRFTVPMAV
>Mature_744_residues
SQLDKDAFEVLLANCADEPIQFPGAIQPHGLLFTLAEPELTILQVSANVQTVLGHVPEQLLGKGLDCVLGAGWAEVIRSA
SAHDSFIDAQRLLMSINGIEFEALLHRHQGVLVLELEIQGKDAQSVSYSERTGNMGRMLRQLHAASDLQTLYEVSVREIQ
KMTGYDRVLIYRFEEEGHGQVIAEASAPSMELFNGLFFPASDIPEQARELYRRNWLRIIPDADYIPVPLVPQLRPDTQQQ
LDLSFSTLRSVSPIHCQYMKNMGVLSSMSVSLIQSGKLWGLISCGNRTPLYVSHELRSACQAIGQVLSLQISAMEALEIS
RQREAKVRALEQLNLAMAGSEENVFDGLAQQPQLLMDLVGATGVAIIEDRQTHCFGICPEPSDIRALHAWMIAGGEPVYA
SHHLSSVYAPAEAYQPVASGVLAMSLPKPVDNGVIWFRPEVKETVQWSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEMT
GIATKWSYGDVFAANDLRRSALENDLARQVRREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKSFSSDGPHTSRRI
STAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPLEVSQIFEEAYTLLAPLAMDKSIEISFNAEPDLKVQADPERL
FQVLSNLIGNAIKFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKAH
GGELAAQSQVGEGSEFRFTVPMAV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=267, Percent_Identity=32.5842696629214, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI145693157, Length=249, Percent_Identity=32.1285140562249, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1790436, Length=240, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI48994928, Length=235, Percent_Identity=31.9148936170213, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1786600, Length=245, Percent_Identity=32.6530612244898, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1788713, Length=251, Percent_Identity=31.0756972111554, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=30.1587301587302, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI87081816, Length=242, Percent_Identity=31.8181818181818, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788393, Length=233, Percent_Identity=26.6094420600858, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1786783, Length=235, Percent_Identity=24.2553191489362, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1790861, Length=218, Percent_Identity=29.3577981651376, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788549, Length=236, Percent_Identity=27.5423728813559, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1790346, Length=219, Percent_Identity=24.6575342465753, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082128, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1789403, Length=215, Percent_Identity=27.4418604651163, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1789808, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 82123; Mature: 81992

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLDKDAFEVLLANCADEPIQFPGAIQPHGLLFTLAEPELTILQVSANVQTVLGHVPEQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHCCHH
LLGKGLDCVLGAGWAEVIRSASAHDSFIDAQRLLMSINGIEFEALLHRHQGVLVLELEIQ
HHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEC
GKDAQSVSYSERTGNMGRMLRQLHAASDLQTLYEVSVREIQKMTGYDRVLIYRFEEEGHG
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
QVIAEASAPSMELFNGLFFPASDIPEQARELYRRNWLRIIPDADYIPVPLVPQLRPDTQQ
CEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHH
QLDLSFSTLRSVSPIHCQYMKNMGVLSSMSVSLIQSGKLWGLISCGNRTPLYVSHELRSA
HHCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECHHHHHH
CQAIGQVLSLQISAMEALEISRQREAKVRALEQLNLAMAGSEENVFDGLAQQPQLLMDLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
GATGVAIIEDRQTHCFGICPEPSDIRALHAWMIAGGEPVYASHHLSSVYAPAEAYQPVAS
CCCCEEEEECCCCEEEEECCCCCHHHHHHHHEEECCCCEEHHHHHHHHCCCHHHHHHHHC
GVLAMSLPKPVDNGVIWFRPEVKETVQWSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEM
CEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEE
TGIATKWSYGDVFAANDLRRSALENDLARQVRREQQAVRARDELVAVVSHDLRNPMTVIS
ECEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLCGMMQKSFSSDGPHTSRRISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
EVSQIFEEAYTLLAPLAMDKSIEISFNAEPDLKVQADPERLFQVLSNLIGNAIKFTPKMG
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHCCCEEECCCCC
TIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKA
CEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEECCCCCCCCEEHHHHCCCCEE
HGGELAAQSQVGEGSEFRFTVPMAV
CCCCEEECCCCCCCCCEEEEECCCC
>Mature Secondary Structure 
SQLDKDAFEVLLANCADEPIQFPGAIQPHGLLFTLAEPELTILQVSANVQTVLGHVPEQ
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHCCHH
LLGKGLDCVLGAGWAEVIRSASAHDSFIDAQRLLMSINGIEFEALLHRHQGVLVLELEIQ
HHCCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEC
GKDAQSVSYSERTGNMGRMLRQLHAASDLQTLYEVSVREIQKMTGYDRVLIYRFEEEGHG
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
QVIAEASAPSMELFNGLFFPASDIPEQARELYRRNWLRIIPDADYIPVPLVPQLRPDTQQ
CEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHH
QLDLSFSTLRSVSPIHCQYMKNMGVLSSMSVSLIQSGKLWGLISCGNRTPLYVSHELRSA
HHCCCHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECHHHHHH
CQAIGQVLSLQISAMEALEISRQREAKVRALEQLNLAMAGSEENVFDGLAQQPQLLMDLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHH
GATGVAIIEDRQTHCFGICPEPSDIRALHAWMIAGGEPVYASHHLSSVYAPAEAYQPVAS
CCCCEEEEECCCCEEEEECCCCCHHHHHHHHEEECCCCEEHHHHHHHHCCCHHHHHHHHC
GVLAMSLPKPVDNGVIWFRPEVKETVQWSGDPKKPLNMESSAGGMRLRPRTSFEIWKVEM
CEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEE
TGIATKWSYGDVFAANDLRRSALENDLARQVRREQQAVRARDELVAVVSHDLRNPMTVIS
ECEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MLCGMMQKSFSSDGPHTSRRISTAIDTMQQAASRMNVLLEDLLDTSKIEAGRYTITPQPL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
EVSQIFEEAYTLLAPLAMDKSIEISFNAEPDLKVQADPERLFQVLSNLIGNAIKFTPKMG
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHCCCEEECCCCC
TIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERYWTVKEGNPTGTGLGLYISQGIIKA
CEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEECCCCCCCCEEHHHHCCCCEE
HGGELAAQSQVGEGSEFRFTVPMAV
CCCCEEECCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]