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The map label for this gene is ydiP [C]

Identifier: 66046728

GI number: 66046728

Start: 4169570

End: 4170439

Strand: Reverse

Name: ydiP [C]

Synonym: Psyr_3499

Alternate gene names: 66046728

Gene position: 4170439-4169570 (Counterclockwise)

Preceding gene: 66046733

Following gene: 66046726

Centisome position: 68.44

GC content: 59.08

Gene sequence:

>870_bases
ATGGCCAGACCTGCCACAGCAGCGATACCGGTGTTCAAGCTCTATGGGGAAACCACGGCCTGGCCGACCCCGGACCTGAT
TCATTGCGAGTCGATCCCCGAGCGCAGCAGGATTCACGAATGGGAGATCAAGCCGCATCGGCATGGCGATCTGGTCCAGC
TGCTTTACGTGCAGTCGGGCAAGGCGATGCTCAAGGTCGAGGACCGGGTCAGCGAGGTCGAGATGCCTTCGTTGCAGGTC
GTTCCCGCACTGAGCGTGCACACCTTCAGGTTCTCCAGAGATATTCAGGGCCATATTCTCAGCCTGGCCAGACCCTTGGT
GGAGCAACTCGAGGCTGCGCTCGACGTCTCAGCCCTCAGCGCGGCACGCTGCTATGCGCTCGGGGCGGACGGCGATTATG
TGGACACGCTGTTCAATGCCATTGCCAATGAATACCGGCAGCCCAGAGCGGGCCGCGATCTGATGCTGCACTCGCTGGTC
AATGTGCTGGCGGTGTGGCTCAGTCGGCGCAGCAGTGAACATGCAGGCGAAGAAACTCATGCGATGGATCGCGGCCGCGA
GCATTTGCAAGTGTTCATGCATCAGCTGGAAGCGAGTTTTCGCGAGCACTGGTCGATCGACCAGCATGCTCAGGCGATGG
GTATCAGCGCCGCGCATTTGAATGCACTGTGTCGGCGGCTGTGCAACCAGTCGGCCTTGCAGATCATCAGTGAGCGTTTG
TTGCTGGAGGCCAAGCGCAACCTGATCTACACCACCCTGACCATCAATCAGGTCTCAGACAGCCTGGGTTTTTCCGAGCC
TGCGTATTTTTCGCGCTTCTTCAAGCGTGCTACCGGGCAATCACCCAAGGCATTTCGCCAGCAAAAATAG

Upstream 100 bases:

>100_bases
GTTTTTGTCTCCTGCATTTTTAATGGATGCCGTCGAGATAAGAAGGCAATATCCGCTGCATTATCTGGACTTTCCGAGGG
TCCGGACGAGAGAGGGCGAC

Downstream 100 bases:

>100_bases
CAACGGGGTGCTCAAGAGCACCCCGTCGGCTTGCCGTACGTCGCTATGCGGTCAGGTTACGACCTGATAGCACGGCACGT
ACGCCGCGCCGCCTGGCAGC

Product: helix-turn-helix, AraC type

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Pobr Arac Family Protein; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MARPATAAIPVFKLYGETTAWPTPDLIHCESIPERSRIHEWEIKPHRHGDLVQLLYVQSGKAMLKVEDRVSEVEMPSLQV
VPALSVHTFRFSRDIQGHILSLARPLVEQLEAALDVSALSAARCYALGADGDYVDTLFNAIANEYRQPRAGRDLMLHSLV
NVLAVWLSRRSSEHAGEETHAMDRGREHLQVFMHQLEASFREHWSIDQHAQAMGISAAHLNALCRRLCNQSALQIISERL
LLEAKRNLIYTTLTINQVSDSLGFSEPAYFSRFFKRATGQSPKAFRQQK

Sequences:

>Translated_289_residues
MARPATAAIPVFKLYGETTAWPTPDLIHCESIPERSRIHEWEIKPHRHGDLVQLLYVQSGKAMLKVEDRVSEVEMPSLQV
VPALSVHTFRFSRDIQGHILSLARPLVEQLEAALDVSALSAARCYALGADGDYVDTLFNAIANEYRQPRAGRDLMLHSLV
NVLAVWLSRRSSEHAGEETHAMDRGREHLQVFMHQLEASFREHWSIDQHAQAMGISAAHLNALCRRLCNQSALQIISERL
LLEAKRNLIYTTLTINQVSDSLGFSEPAYFSRFFKRATGQSPKAFRQQK
>Mature_288_residues
ARPATAAIPVFKLYGETTAWPTPDLIHCESIPERSRIHEWEIKPHRHGDLVQLLYVQSGKAMLKVEDRVSEVEMPSLQVV
PALSVHTFRFSRDIQGHILSLARPLVEQLEAALDVSALSAARCYALGADGDYVDTLFNAIANEYRQPRAGRDLMLHSLVN
VLAVWLSRRSSEHAGEETHAMDRGREHLQVFMHQLEASFREHWSIDQHAQAMGISAAHLNALCRRLCNQSALQIISERLL
LEAKRNLIYTTLTINQVSDSLGFSEPAYFSRFFKRATGQSPKAFRQQK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32692; Mature: 32561

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPATAAIPVFKLYGETTAWPTPDLIHCESIPERSRIHEWEIKPHRHGDLVQLLYVQSG
CCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
KAMLKVEDRVSEVEMPSLQVVPALSVHTFRFSRDIQGHILSLARPLVEQLEAALDVSALS
CEEEEEHHHHHHCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AARCYALGADGDYVDTLFNAIANEYRQPRAGRDLMLHSLVNVLAVWLSRRSSEHAGEETH
HHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AMDRGREHLQVFMHQLEASFREHWSIDQHAQAMGISAAHLNALCRRLCNQSALQIISERL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLEAKRNLIYTTLTINQVSDSLGFSEPAYFSRFFKRATGQSPKAFRQQK
HHHHHHCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCC
>Mature Secondary Structure 
ARPATAAIPVFKLYGETTAWPTPDLIHCESIPERSRIHEWEIKPHRHGDLVQLLYVQSG
CCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
KAMLKVEDRVSEVEMPSLQVVPALSVHTFRFSRDIQGHILSLARPLVEQLEAALDVSALS
CEEEEEHHHHHHCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AARCYALGADGDYVDTLFNAIANEYRQPRAGRDLMLHSLVNVLAVWLSRRSSEHAGEETH
HHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
AMDRGREHLQVFMHQLEASFREHWSIDQHAQAMGISAAHLNALCRRLCNQSALQIISERL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLEAKRNLIYTTLTINQVSDSLGFSEPAYFSRFFKRATGQSPKAFRQQK
HHHHHHCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA