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The map label for this gene is flgD [H]

Identifier: 66046708

GI number: 66046708

Start: 4150988

End: 4151677

Strand: Reverse

Name: flgD [H]

Synonym: Psyr_3479

Alternate gene names: 66046708

Gene position: 4151677-4150988 (Counterclockwise)

Preceding gene: 66046709

Following gene: 66046707

Centisome position: 68.13

GC content: 57.25

Gene sequence:

>690_bases
ATGGCCGTTGATAGCACCGCAGCAAACAGCGTTTCATCGACATTTTTGAATACGCTGCAGAATCCGACGCCGACCGCGAC
GAATTCTACCGGCACGCTGGGCAAGGACTCTTTTCTGCAGTTGCTCGTGACGCAGATGAAGAACCAGAACCCGCTGGATC
CACAGGACAACACGCAGTTCGTGGCGCAACTGGCGCAGTTCAGCAGCCTTGAAAGCATGCAGAACCTGACGTCGACGGTG
GACACGATCGCCAGCAGCTACAAGTCGTCGCAGGCCTTGCAGGCCTCGTCACTGGTCGGTCGCTCAGTGATCATCGATGC
GAGCAGCACCTCGGTCGATACCACCAAAGGCCTGACCGGTTCGATCGTGGTGCCGAGCGAAAGCTCGCTAACGACGGTCA
AGGTGTACGACGCGCAATCGAATCTGGTCGACAGTGTCGACCTGGGCACGCAAAAAGCCGGTACCACCAGCTTTGCCTGG
GACGGTACGGACTCAAGCGGTACCCAGCTGCCATCGGGCACTTACAGCTTCAAGGCTGAAGGCTCGGTCGAAGGCAAGAA
CACACAGTTTTCAACTTACCTGCCCGCCACGGTCAACAGTGTCACGCTGGGTGTCAATGGCGCAGAAACAACGCTTAACC
TGGCCAGCGGCAGTGTTGCCCTGTCCAAAGTTCAAACTATCGGATTGTAG

Upstream 100 bases:

>100_bases
TGCCAGCCGGTCTTTCCAGACCAACGCAGAAATCATGAACACCGCTAAATCCATGATGCAGAAGGTTCTGACCCTCGGTC
AGTGATAGAAGGCGAACGTT

Downstream 100 bases:

>100_bases
AGCCGCTACGGCGCAGGAGTGAAACATGTCTTTCAATATCGGCCTTAGTGGGCTCTATGCTGCAAACAAAAGTCTCGACG
TTACCGGCAACAACATTGCC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTV
DTIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTGSIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAW
DGTDSSGTQLPSGTYSFKAEGSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLASGSVALSKVQTIGL

Sequences:

>Translated_229_residues
MAVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTV
DTIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTGSIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAW
DGTDSSGTQLPSGTYSFKAEGSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLASGSVALSKVQTIGL
>Mature_228_residues
AVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTVD
TIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTGSIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAWD
GTDSSGTQLPSGTYSFKAEGSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLASGSVALSKVQTIGL

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=203, Percent_Identity=32.0197044334975, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23631; Mature: 23500

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQF
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VAQLAQFSSLESMQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
SIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAWDGTDSSGTQLPSGTYSFKAE
EEEECCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEC
GSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLASGSVALSKVQTIGL
CCCCCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEHHHHHHCCC
>Mature Secondary Structure 
AVDSTAANSVSSTFLNTLQNPTPTATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQF
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VAQLAQFSSLESMQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTSVDTTKGLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
SIVVPSESSLTTVKVYDAQSNLVDSVDLGTQKAGTTSFAWDGTDSSGTQLPSGTYSFKAE
EEEECCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEC
GSVEGKNTQFSTYLPATVNSVTLGVNGAETTLNLASGSVALSKVQTIGL
CCCCCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]