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The map label for this gene is ntrC [H]

Identifier: 66046690

GI number: 66046690

Start: 4125202

End: 4126677

Strand: Reverse

Name: ntrC [H]

Synonym: Psyr_3461

Alternate gene names: 66046690

Gene position: 4126677-4125202 (Counterclockwise)

Preceding gene: 66046691

Following gene: 66046689

Centisome position: 67.72

GC content: 59.42

Gene sequence:

>1476_bases
ATGTGGCGTGAAATCAAGATTCTGCTAATCGATGACGATAGCCAGCGCCGCCGGGATCTGGCGGTTATCCTGAATTTTCT
TGGCGAAGAAAATCTCTCCTGTTCCAGTCAGGACTGGCAGCAGGTGGTCGGCTCTCTGGCGTCTCCACGAGAAGTACTTT
GCGTACTGGTCGGTAGCGTAAACGCGCCGGGCAGCCTGCAAGGGCTCCTTAAGACCATCGCCGCATGGGATGAGTTCCTT
CCTGTGCTGCTGATGAGCGAAAATTCCTCTGTCGAATTGCCCGAGGATTTGCGCAGGCGAGTCCTTTCTGCACTCGAAAT
GCCGCCCAGCTACAGCAAGCTGCTCGATTCGCTGCACCGTGCCCAGGTCTATCGCGAGATGTACGATCAGGCCCGCGAGC
GCGGCCGTCATCGTGAACCGAACCTGTTCCGCAGTCTGGTAGGTACCAGCCGCGCGATTCAGCACGTGCGGCAGATGATG
CAGCAGGTCGCCGACACCGATGCCAGCGTACTGATTCTGGGCGAGTCGGGCACTGGCAAGGAAGTGGTTGCGCGTAACCT
GCACTACCACTCCAAGCGTCGTGATGCGCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCGGCCGAGCTGCTCGAAAGCG
AGCTGTTCGGACACGAGAAGGGCGCGTTTACCGGTGCGATCACCAGCCGTGCCGGGCGCTTCGAGCTGGCCAACGGCGGC
ACATTGTTTCTCGACGAAATCGGCGACATGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGTCCTGCAGGAACGCACCTT
TGAGCGTGTGGGCAGCAACAAGACGCAAAGCATCGATGTGCGCATTATCGCCGCGACGCACAAGAATCTCGAGACCATGA
TCGAGCTGGGCAGCTTCCGCGAAGACCTTTATTACCGCCTCAATGTGTTCCCGATCGAGATGGCGCCGTTGCGCGAGCGT
GTCGAAGACATCCCGCTGCTCATGAATGAATTGATTTCGCGCATGGAGCACGAGAAGCGCGGTTCGATTCGTTTCAACTC
CGCCGCCATCATGTCGCTGTGTCGCCATGCCTGGCCGGGCAACGTTCGTGAGCTGGCCAACCTGGTCGAGCGCATGGCGA
TCATGCACCCGTACGGTGTGATTGGCGTGGCTGAGCTGCCAAAGAAGTTTCGCTACGTCGACGACGAAGACGAGCAGATG
GTCGACAGCATGCGCAGCGAGATCGAAGAGCGTGTGGCGATCAACAGCAATACGCCGAACTTCGCTTCCGGCGCGATGCT
GCCGCCTGAAGGTCTTGATCTGAAAGACTACCTCGGTGGTCTGGAGCAGGGCCTGATTCAGCAGGCGCTCGACGATGCCA
ACGGTATCGTTGCCCGTGCTGCGGAGCGCTTGCGTATTCGTCGTACCACGCTGGTCGAGAAGATGCGCAAGTACGGTATG
AGCCGCCGTGAGGGCGATGAACAGGCAGATGATTGA

Upstream 100 bases:

>100_bases
TGATGTTTACTATTTTCTGGCGTCTCAAGGTTTATACAGCTGAGAAGCCAAGCTGCCCCCCAATCATGGGCATTGAGTTG
ACTAGGGAAGTTGCTATTGC

Downstream 100 bases:

>100_bases
CGCCGGTTTTTTGTGCCAAAAACCAAGCCCCTGATTTTTCAGGGGTTTTTTTTAGGCACGGGGATTGCTAAGTCTCTCTT
AACACACCGTTTACTGACGG

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MWREIKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLCVLVGSVNAPGSLQGLLKTIAAWDEFL
PVLLMSENSSVELPEDLRRRVLSALEMPPSYSKLLDSLHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMM
QQVADTDASVLILGESGTGKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGSFREDLYYRLNVFPIEMAPLRER
VEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPGNVRELANLVERMAIMHPYGVIGVAELPKKFRYVDDEDEQM
VDSMRSEIEERVAINSNTPNFASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRREGDEQADD

Sequences:

>Translated_491_residues
MWREIKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLCVLVGSVNAPGSLQGLLKTIAAWDEFL
PVLLMSENSSVELPEDLRRRVLSALEMPPSYSKLLDSLHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMM
QQVADTDASVLILGESGTGKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGSFREDLYYRLNVFPIEMAPLRER
VEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPGNVRELANLVERMAIMHPYGVIGVAELPKKFRYVDDEDEQM
VDSMRSEIEERVAINSNTPNFASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRREGDEQADD
>Mature_491_residues
MWREIKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLCVLVGSVNAPGSLQGLLKTIAAWDEFL
PVLLMSENSSVELPEDLRRRVLSALEMPPSYSKLLDSLHRAQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMM
QQVADTDASVLILGESGTGKEVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGSFREDLYYRLNVFPIEMAPLRER
VEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPGNVRELANLVERMAIMHPYGVIGVAELPKKFRYVDDEDEQM
VDSMRSEIEERVAINSNTPNFASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRREGDEQADD

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=343, Percent_Identity=45.4810495626822, Blast_Score=278, Evalue=5e-76,
Organism=Escherichia coli, GI1788550, Length=484, Percent_Identity=36.9834710743802, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1790437, Length=480, Percent_Identity=38.9583333333333, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1789087, Length=344, Percent_Identity=45.0581395348837, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1790299, Length=484, Percent_Identity=38.0165289256198, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI1788905, Length=306, Percent_Identity=42.8104575163399, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1789233, Length=348, Percent_Identity=40.8045977011494, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1786524, Length=390, Percent_Identity=37.6923076923077, Blast_Score=218, Evalue=9e-58,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=45.4545454545455, Blast_Score=208, Evalue=8e-55,
Organism=Escherichia coli, GI87081872, Length=323, Percent_Identity=38.6996904024768, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1787583, Length=351, Percent_Identity=35.8974358974359, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1789828, Length=240, Percent_Identity=37.9166666666667, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87081858, Length=320, Percent_Identity=30.3125, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 55509; Mature: 55509

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWREIKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLCVLVGSV
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
NAPGSLQGLLKTIAAWDEFLPVLLMSENSSVELPEDLRRRVLSALEMPPSYSKLLDSLHR
CCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCC
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGSFR
EEEEEHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHH
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPG
HHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCC
NVRELANLVERMAIMHPYGVIGVAELPKKFRYVDDEDEQMVDSMRSEIEERVAINSNTPN
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
FASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
CCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
SRREGDEQADD
CCCCCCCCCCC
>Mature Secondary Structure
MWREIKILLIDDDSQRRRDLAVILNFLGEENLSCSSQDWQQVVGSLASPREVLCVLVGSV
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
NAPGSLQGLLKTIAAWDEFLPVLLMSENSSVELPEDLRRRVLSALEMPPSYSKLLDSLHR
CCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEEECCCC
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIELGSFR
EEEEEHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHH
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPG
HHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCC
NVRELANLVERMAIMHPYGVIGVAELPKKFRYVDDEDEQMVDSMRSEIEERVAINSNTPN
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
FASGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
CCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
SRREGDEQADD
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]