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The map label for this gene is ycdC [C]

Identifier: 66046553

GI number: 66046553

Start: 3975874

End: 3976488

Strand: Direct

Name: ycdC [C]

Synonym: Psyr_3324

Alternate gene names: 66046553

Gene position: 3975874-3976488 (Clockwise)

Preceding gene: 66046549

Following gene: 66046556

Centisome position: 65.25

GC content: 60.65

Gene sequence:

>615_bases
ATGACCGAACCCATGCGCCTTACCGATCAGAAACGCGAATCCATCGTCCAGGCGGCTATTGCCGAATTCGGCGATCGTGG
CTTCGAGATCACCAGCATGGACCGGATCGCCGCGCGGGCCAAGGTTTCCAAGCGTACGGTCTATAACCATTTCCCCAGCA
AGGAAGAACTGTTCGCCGAGATGCTGCAGCGCCTCTGGAGCTGCGCCCCGCCGCAGGCTGAGGTGGTTTTTCGCCCGCAA
ATCGGGCTGCGCGAGCAGTTGCGGGAATTGCTGTGGGGCAAGATGCGCAACCTGACCAACAGCCACTTTATCGACCTGGC
CCGCGTGGTGGTCGGCGCCACCATTCACTCACCCGAACGGGCTCAGGTGTGGATGGCGCGTATCAATGAACGAGAAGAAA
CCTTCAGTGCCTGGATTCGCGCCGCGCAGAAGGACGGCCGGCTGAAGCCGGTTGACCCGGCCTTTGCCGCGACGCAAATG
CATGCATTGCTCAAGTCGTTCGCGTTCTGGCCGCAGGTGACGTTCAGTGCTGCATTGCTTACCCCCGAGGAGCAGCACAC
GGTGGTCGAGTCGACGCTGGACATGTTTCTCGGCTGGTACGAAATAACCCGCTGA

Upstream 100 bases:

>100_bases
GTTTTACACTACACGGTGTAGTTTTAAGCTTGCATGATCCTTGGCGACAAGTAAACTGCTGAGTGTAATTTTCTCTAAAC
GCACGTTTGAAGCGAACCTA

Downstream 100 bases:

>100_bases
CGCTGAAGCGGTCAGTCCAGCACAACGCCCCGGCACTCACCAAAGCCAATCGAGACGTGCCCTTCGCGATGACAACGGGC
ACGCAGAATCACTTCGTCGC

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR-Like Virulence Regulator; TetR Family Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTEPMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAKVSKRTVYNHFPSKEELFAEMLQRLWSCAPPQAEVVFRPQ
IGLREQLRELLWGKMRNLTNSHFIDLARVVVGATIHSPERAQVWMARINEREETFSAWIRAAQKDGRLKPVDPAFAATQM
HALLKSFAFWPQVTFSAALLTPEEQHTVVESTLDMFLGWYEITR

Sequences:

>Translated_204_residues
MTEPMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAKVSKRTVYNHFPSKEELFAEMLQRLWSCAPPQAEVVFRPQ
IGLREQLRELLWGKMRNLTNSHFIDLARVVVGATIHSPERAQVWMARINEREETFSAWIRAAQKDGRLKPVDPAFAATQM
HALLKSFAFWPQVTFSAALLTPEEQHTVVESTLDMFLGWYEITR
>Mature_203_residues
TEPMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAKVSKRTVYNHFPSKEELFAEMLQRLWSCAPPQAEVVFRPQI
GLREQLRELLWGKMRNLTNSHFIDLARVVVGATIHSPERAQVWMARINEREETFSAWIRAAQKDGRLKPVDPAFAATQMH
ALLKSFAFWPQVTFSAALLTPEEQHTVVESTLDMFLGWYEITR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787249, Length=172, Percent_Identity=29.0697674418605, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23520; Mature: 23389

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAKVSKRTVYNHFPSKEELFAE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
MLQRLWSCAPPQAEVVFRPQIGLREQLRELLWGKMRNLTNSHFIDLARVVVGATIHSPER
HHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
AQVWMARINEREETFSAWIRAAQKDGRLKPVDPAFAATQMHALLKSFAFWPQVTFSAALL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHC
TPEEQHTVVESTLDMFLGWYEITR
CCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEPMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAKVSKRTVYNHFPSKEELFAE
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
MLQRLWSCAPPQAEVVFRPQIGLREQLRELLWGKMRNLTNSHFIDLARVVVGATIHSPER
HHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
AQVWMARINEREETFSAWIRAAQKDGRLKPVDPAFAATQMHALLKSFAFWPQVTFSAALL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHC
TPEEQHTVVESTLDMFLGWYEITR
CCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA