| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is slt [H]
Identifier: 66046524
GI number: 66046524
Start: 3942828
End: 3944756
Strand: Direct
Name: slt [H]
Synonym: Psyr_3295
Alternate gene names: 66046524
Gene position: 3942828-3944756 (Clockwise)
Preceding gene: 66046522
Following gene: 66046527
Centisome position: 64.7
GC content: 61.43
Gene sequence:
>1929_bases ATGCGCAGTCGTTTGTTCAGCCTTTTATCGTGCCTGCTCCTCTCCGCCACCGCCGTCCAGACTGCTCATGCGGTAGACCT CAACCAACAACGCAAATATTACGACGAAGCAAAGCGCGCACTGGCCAAAGGCGATTCCGGCCCCTACCAGATGTACGCCA CGGCCCTGGCCGATTATCCGCTGGAGCCTTACCTCGAATACGACGAACTGACGGCACGCCTGAAAACGGCAAGCAATCCC GAAATCGAGAAGTTTCTTGCCGAGCACGGCGACCTGCCGCAAGCCAACTGGATGAAGCTGCGCTGGTTGCGCTGGCTGGC CGAGCGTGGCGACTGGCAAACCTTCGTCAAGTATTACGACCCGAAGATGAAGTTCGTCGAGCTGGACTGCCTGTACGGGC AGTATCAGCTGAACAGCAACAAGCGCGCCGAAGGCTTCGCCAGTGCCGAAAAGCTGTGGATGACCGGCAAGACTTTACCC GCTGCCTGTGACGGTTTCTTTGCCCAGTGGGCGGCCGCCGGCCAGTTGACCGAACAGAAGCGCTGGCAGCGCGCCAAGCT GGCGGCACAGACGCGCAATTACAGTCTGGCCAGCACGCTGGTGGACAGCCTCAACTCGCTGGCACCGCAAGGCCGTCTGC TGCTGGCTGTCGCGCAGAAACCGGAGATGGTCAGCAACCCGTCGCAATTTGCCCCGGTAGACGAGGCGATGTCCGATGTG GTCGGTCTCGGCCTGCGCCGGCTCGCCAAGCAGGACCCGCAGAAAGCCCTGTCGATGCTCGATGGCTATGCCGCGACCAT GCATTTCTCCCGCGAAGAGCAGGTCGAGATTGCCAAGGAAATCGGCCTGACCCTGGCACGTCGTTATGACGACCGCGCAC TGGAGGTCATGACCAGATACGACCCTGAATTGCGTGACGACACCGTGACCGAATGGCGCCTGCGCCTGCTGCTGCGCCTG GGTCGCTGGGAAGACGCCTACGAGCTGGCGCGCCGACTGCCCAAGGATCTGGCAGCGACCAATCGCTGGCGTTACTGGGA AGCGCGCTCTCTGGAACTGGCACAACCCAACAGCCCGCTGATTGCCGCACTGTACAAGGATGTCGCCAAGGAGCGTGATT TCTACGGGTTTCTGGCTGCCGACCGCACTCAAAGCCCCTACCAGCTCAACAACAAGCCGCTGGTGCTGAGCCAGGCACTG ATCAACAAGGTACGCAACACGCCGGGCGTGCGTCGCGCACTGGAGTTTCACGATCGCGGCGAGATCGTCAACGGCCGACG CGAGTGGTATCACGTGAGCCGCCTGTTCAATCGTGACGAGATGGTTGCCCAGGCCAAGCTGGCCTATGACATGCAATGGT ATTTCCCGGCAATCCGTACCATCAGCCAGGCGCAATACTGGGACGATCTGGATATTCGCTTCCCGATGGCGCACCGCGAC ACGCTGGTGCGCGAAGCCAAGGTGCGCGGCCTGCATTCGAGCTGGGTGTTCGCCATCACGCGCCAGGAAAGCGCCTTCAT GGACGATGCCCGCTCGGGCGTCGGCGCCAGCGGGCTGATGCAACTGATGCCTGCCACCGCCAAGGAGACTGCGCGCAAAT ACAGCATCCCGCTGGCCTCGCCTCAGCAGGTGCTGGATCCGGACACCAACATCCAGCTGGGCGCCGCCTACCTGAGCTCG GTGCATGCGCAGTTCAACGGTAATCGGGTGCTCGCTTCAGCGGCCTACAACGCAGGTCCCGGGCGCGTGCGCCAATGGCT CAAAGGTGCCAACCATCTGGCCTTCGATGTCTGGGTAGAGAGCATTCCGTTCGATGAGACCCGTCAGTACGTACAGAACG TATTGTCGTACTCGGTGATCTACGGCCAGAAACTCAACTCGCCGCAGCCTCTGGTGGACTGGCACGAGCGGTTTTTCGAC GACCAGTGA
Upstream 100 bases:
>100_bases ATTTCCATATGAGACAAGCTCGTCGGCAATGCTTTCACCAAGAGCTGGCAAAAGGCTAAGCTAGCAATACTTTTCACCGA CTCATCTGCTCGGAAGTCTC
Downstream 100 bases:
>100_bases CCGGTCGGCAGGAGTGCTGCGTTAAGCACTCCTGCCAGACAACGGCAGTCCCCGCCCCTACTCCAGCACTTCGACTGACA TCCCCACTTCAAGCTCGCCC
Product: SLT
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 642; Mature: 642
Protein sequence:
>642_residues MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYPLEPYLEYDELTARLKTASNP EIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYDPKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLP AACDGFFAQWAAAGQLTEQKRWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRYDPELRDDTVTEWRLRLLLRL GRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPLIAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQAL INKVRNTPGVRRALEFHDRGEIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLASPQQVLDPDTNIQLGAAYLSS VHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVESIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFD DQ
Sequences:
>Translated_642_residues MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYPLEPYLEYDELTARLKTASNP EIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYDPKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLP AACDGFFAQWAAAGQLTEQKRWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRYDPELRDDTVTEWRLRLLLRL GRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPLIAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQAL INKVRNTPGVRRALEFHDRGEIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLASPQQVLDPDTNIQLGAAYLSS VHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVESIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFD DQ >Mature_642_residues MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYPLEPYLEYDELTARLKTASNP EIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYDPKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLP AACDGFFAQWAAAGQLTEQKRWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRYDPELRDDTVTEWRLRLLLRL GRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPLIAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQAL INKVRNTPGVRRALEFHDRGEIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLASPQQVLDPDTNIQLGAAYLSS VHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVESIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFD DQ
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=625, Percent_Identity=31.52, Blast_Score=292, Evalue=5e-80,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 73616; Mature: 73616
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYP CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC LEPYLEYDELTARLKTASNPEIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYD CCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC PKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLPAACDGFFAQWAAAGQLTEQK CCCEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH RWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHH VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRY HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHC DPELRDDTVTEWRLRLLLRLGRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPL CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCEEEECCCCEECCCCCHH IAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQALINKVRNTPGVRRALEFHDRG HHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC EIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHH TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLAS HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCCC PQQVLDPDTNIQLGAAYLSSVHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVE CHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEHHH SIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFDDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure MRSRLFSLLSCLLLSATAVQTAHAVDLNQQRKYYDEAKRALAKGDSGPYQMYATALADYP CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC LEPYLEYDELTARLKTASNPEIEKFLAEHGDLPQANWMKLRWLRWLAERGDWQTFVKYYD CCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC PKMKFVELDCLYGQYQLNSNKRAEGFASAEKLWMTGKTLPAACDGFFAQWAAAGQLTEQK CCCEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH RWQRAKLAAQTRNYSLASTLVDSLNSLAPQGRLLLAVAQKPEMVSNPSQFAPVDEAMSDV HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHH VGLGLRRLAKQDPQKALSMLDGYAATMHFSREEQVEIAKEIGLTLARRYDDRALEVMTRY HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHC DPELRDDTVTEWRLRLLLRLGRWEDAYELARRLPKDLAATNRWRYWEARSLELAQPNSPL CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCEEEECCCCEECCCCCHH IAALYKDVAKERDFYGFLAADRTQSPYQLNNKPLVLSQALINKVRNTPGVRRALEFHDRG HHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC EIVNGRREWYHVSRLFNRDEMVAQAKLAYDMQWYFPAIRTISQAQYWDDLDIRFPMAHRD CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHH TLVREAKVRGLHSSWVFAITRQESAFMDDARSGVGASGLMQLMPATAKETARKYSIPLAS HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCCC PQQVLDPDTNIQLGAAYLSSVHAQFNGNRVLASAAYNAGPGRVRQWLKGANHLAFDVWVE CHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEHHH SIPFDETRQYVQNVLSYSVIYGQKLNSPQPLVDWHERFFDDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]