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The map label for this gene is ydcN [C]

Identifier: 66046479

GI number: 66046479

Start: 3893997

End: 3894566

Strand: Reverse

Name: ydcN [C]

Synonym: Psyr_3250

Alternate gene names: 66046479

Gene position: 3894566-3893997 (Counterclockwise)

Preceding gene: 66046487

Following gene: 66046478

Centisome position: 63.91

GC content: 63.68

Gene sequence:

>570_bases
ATGCACAAAGAAAATTCCCAGCGCCCTCCGGTGCTGCAGCACGTCAGCCAGAACGTGCGGCGTCTGCGTAACAGTGCGGA
CCTCAGCCAGACGGCGCTGGCGGAAAAGTCCGGAGTCAGCCGACGCATGCTGGTCGCTATCGAGGCCGGCGAGAAAAACG
TCAGCCTGGCGACCCTGGACCGCGTGGCCGAAGCCCTGGAAGTGGCGTTCAGCGACCTGATCCAGGCGCCCGAAAATCGC
GATTACAGCCGCATCAACGAGCTGGCATGGGCCGGTACGATTGCCGGCAGCAAAGCGGTGTTGCTGGCCAGGGCCGTTGC
CCGGCGCGAGGTGGAGTTGTGGGAATTCTGTCTGCAGCCTGGGGACGCCTATGTCTCGGAGGCCGATCCCGATGGCTGGA
GTGAACAGGTCTACGTCGTCGAAGGGCATCTGACGTTGCGCTTTGCCGACCCTGCGGCCATGCAGCAGGTAGGGGCGGGC
GAGTTCTTCATGTTCCCCAGCAATCAGCCGCACCGCTACTGCAACGACGCCGATGTGCCCCTGCGCTTCGTGCGTAACGT
CGTGCTCTGA

Upstream 100 bases:

>100_bases
ATTCCTGTTAATTGCCATGTGCGCGATGAGAGGCTGAACACCCTGACAGTGTCCCTGGGCTGGGCAGTATAATGCGCAAC
GGTTTGATGTGAGCACCAGC

Downstream 100 bases:

>100_bases
CCTTCCCATTCTTTTACAGCCACCCCAGCGAGGCACTGTTCGATGATCGAAGATTCCCACCAGACGGCTGACATTCTGAT
CATCGGCGGCGGTCTGAGCG

Product: helix-hairpin-helix DNA-binding motif-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator Protein; Y4mF Family Transcriptional Regulator

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLIQAPENR
DYSRINELAWAGTIAGSKAVLLARAVARREVELWEFCLQPGDAYVSEADPDGWSEQVYVVEGHLTLRFADPAAMQQVGAG
EFFMFPSNQPHRYCNDADVPLRFVRNVVL

Sequences:

>Translated_189_residues
MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLIQAPENR
DYSRINELAWAGTIAGSKAVLLARAVARREVELWEFCLQPGDAYVSEADPDGWSEQVYVVEGHLTLRFADPAAMQQVGAG
EFFMFPSNQPHRYCNDADVPLRFVRNVVL
>Mature_189_residues
MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLIQAPENR
DYSRINELAWAGTIAGSKAVLLARAVARREVELWEFCLQPGDAYVSEADPDGWSEQVYVVEGHLTLRFADPAAMQQVGAG
EFFMFPSNQPHRYCNDADVPLRFVRNVVL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21049; Mature: 21049

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHH
RVAEALEVAFSDLIQAPENRDYSRINELAWAGTIAGSKAVLLARAVARREVELWEFCLQP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
GDAYVSEADPDGWSEQVYVVEGHLTLRFADPAAMQQVGAGEFFMFPSNQPHRYCNDADVP
CCCCCCCCCCCCCCCEEEEEECEEEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCCH
LRFVRNVVL
HHHHHHHCC
>Mature Secondary Structure
MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHH
RVAEALEVAFSDLIQAPENRDYSRINELAWAGTIAGSKAVLLARAVARREVELWEFCLQP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
GDAYVSEADPDGWSEQVYVVEGHLTLRFADPAAMQQVGAGEFFMFPSNQPHRYCNDADVP
CCCCCCCCCCCCCCCEEEEEECEEEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCCH
LRFVRNVVL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA