Click here to switch to the map view.

The map label for this gene is 66046475

Identifier: 66046475

GI number: 66046475

Start: 3888755

End: 3889660

Strand: Reverse

Name: 66046475

Synonym: Psyr_3246

Alternate gene names: NA

Gene position: 3889660-3888755 (Counterclockwise)

Preceding gene: 66046478

Following gene: 66046474

Centisome position: 63.83

GC content: 59.27

Gene sequence:

>906_bases
ATGGCAAGGGCAATCTGGAAGGGCGCAATCAGCTTCGGGCTGGTGCATATACCGGTCGCGTTGGTTTCGGCGACAACGTC
GACCAGTGTCGACTTCGACTGGCTCGACAAACGCAGCATGGACCCGGTCGGCTACAAGCGAATCAACAAGGTCACCGGCA
AGGAAGTCACCAGCGAAAACATCGTCAAGGGCGTGGCATACGAGAAGGATCGCTATGTGGTACTCAGCGAGGAGGAAATT
CGTTCCGCGCACCCCAAATCGACGCAGACCATCGACATATTCGCCTTCGTCGACAGCCAGCAGATCCCTTTGCAGAACAT
CGACACGCCTTATTTCCTGACGCCCGACAAGCGCGGCGAGAAAGTCTATGCGTTATTGCGCGAAACCCTGGTCGATACTA
AAAAGGTCGCGCTGGCTAACGTCGTGCTGCATACCCGCGAACACCTGGCGGCGGTCATGCCGCTGGAGTCGGCGCTGGTG
ATGGTGATCCTGCGCTGGCCTGCCGACGTGCGTGAACTGGACACACTGGAACTGAGCGACGCGGTGACCGACGCCAAGTT
GAACAAGAGCGAACGTGACATGGCCAAGCGTCTGGTCAAGGACATGAGCGCTGACTGGCAGCCTGAGCAGTATCGCGACA
CCTTTCAGGACAAGATCATGCACCTGGTCAAGACCAAGGCAGACGAAGGCGAGATCGAGGATGTCGAGACCGATCCGGCC
GAGGAAGAACGCAAGAGTGCCGATGTCATCGACCTCACCGACCTGCTGCGACGCAGTCTGGCGGGCAAGGGCGGGGCCGG
TAAAGCCAAGACGAGCAAGCCTGCGGCGAAGGAAAAACCGGCCGACAAGGACGGTGCCAGGCCCAAGCGGCCCGCCGCAC
GTAAGAAAACCAGCAAAGCCTCTTGA

Upstream 100 bases:

>100_bases
AAACTCGTTCAGCACAGCGGGTTTCCCGGCGCTCGTCAGGCGGCCGAAACTTTTCTCCGACCGGCCCTGTCACCTTTCCA
GGACCAACAGGAGTCAGACC

Downstream 100 bases:

>100_bases
GCCCTACGGAGTGACCGGTGATGGCCAAGCCCGCCAGTGAATACACCCGCAAGCGCAATTTCGCCATCACCTCCGAGCCT
GCGGAGAGCAAGCGTAAGGG

Product: Ku

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MARAIWKGAISFGLVHIPVALVSATTSTSVDFDWLDKRSMDPVGYKRINKVTGKEVTSENIVKGVAYEKDRYVVLSEEEI
RSAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTPDKRGEKVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALV
MVILRWPADVRELDTLELSDAVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLVKTKADEGEIEDVETDPA
EEERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPKRPAARKKTSKAS

Sequences:

>Translated_301_residues
MARAIWKGAISFGLVHIPVALVSATTSTSVDFDWLDKRSMDPVGYKRINKVTGKEVTSENIVKGVAYEKDRYVVLSEEEI
RSAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTPDKRGEKVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALV
MVILRWPADVRELDTLELSDAVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLVKTKADEGEIEDVETDPA
EEERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPKRPAARKKTSKAS
>Mature_300_residues
ARAIWKGAISFGLVHIPVALVSATTSTSVDFDWLDKRSMDPVGYKRINKVTGKEVTSENIVKGVAYEKDRYVVLSEEEIR
SAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTPDKRGEKVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALVM
VILRWPADVRELDTLELSDAVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLVKTKADEGEIEDVETDPAE
EERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPKRPAARKKTSKAS

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 33572; Mature: 33440

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAIWKGAISFGLVHIPVALVSATTSTSVDFDWLDKRSMDPVGYKRINKVTGKEVTSEN
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHH
IVKGVAYEKDRYVVLSEEEIRSAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTPDKRGE
HHHHHEECCCCEEEECHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCH
KVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALVMVILRWPADVRELDTLELSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLVKTKADEGEIEDVETDPA
HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
EEERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPKRPAARKKTSKA
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
S
C
>Mature Secondary Structure 
ARAIWKGAISFGLVHIPVALVSATTSTSVDFDWLDKRSMDPVGYKRINKVTGKEVTSEN
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHH
IVKGVAYEKDRYVVLSEEEIRSAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTPDKRGE
HHHHHEECCCCEEEECHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCH
KVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALVMVILRWPADVRELDTLELSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLVKTKADEGEIEDVETDPA
HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
EEERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPKRPAARKKTSKA
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]