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The map label for this gene is ybhD [H]

Identifier: 66046465

GI number: 66046465

Start: 3874607

End: 3875497

Strand: Reverse

Name: ybhD [H]

Synonym: Psyr_3236

Alternate gene names: 66046465

Gene position: 3875497-3874607 (Counterclockwise)

Preceding gene: 66046469

Following gene: 66046464

Centisome position: 63.6

GC content: 62.96

Gene sequence:

>891_bases
ATGAACGTCAAGCAGCTTCGTGCTTTTCTGGCCGTCGCGCAGTACCTGAGCTTCGCTCAGGCCGGCGAGCGACTCAACGT
GTCGCAACCGGCCTTGAGCCTGACGATCAAGAGCCTTGAGGAGGACCTCGGCGGACAGTTGTTGACGCGCACCACGCGCA
ACGTCGGTCTGACGCCTGAAGGCGAAACCCTGTTGCCGCTGGCGCGCCAGTTGCTGGCCGACTGGGACAACACCGAAGAA
CTGCTGCGCCAGCGTTTTACGTTGCAAATGGGCAGGGTGTCGGTGGCCGCCATGCCGTCGTTTGCCGGCAATCTGCTGCC
CGCGGCCTTGAAGGTGTTTCGCGGGCGCTACCCGCGCGTCAATGTGGCGGTGCATGACGTGATCAATGAGCAAGTGCTGG
AAATGGTTCGCCATCGCCGTGTCGAACTGGGTATCGGCTTTGAGCCCGAGTCGAACAGTGCCCTGTCGTTCACCCCGTTC
TATATGGACCGCTTCGTCGCCGTGGTGCCCCGGGAGTCGCCGCTGGCCGAGCGGCGTGAGGTTACCTGGGCAGAACTGCT
GCGTGAAGATTTCATCGCCCTGCAACGCCCGTCGGCAGTACGTTTGCTGCTGGAACAGGCCATCGAGCCGCGCCACGGCA
AGCTGGCGGTCGCGTTCGAGAGCCATCAGTTGTCGACCATCGGGCGCATGGTTGCCAATGGCCTGGGCGTCAGCGCGGTG
CCGTCACTGTGCATCGGGCAGATGCAGGAACTGGGGGCCTGCTGCGTGGCGCTGGTGGAGCCGCTTATCGAGCGGCGTAT
CGGCCTGATGATGCTCGCCGATCACAAGCTTTCAACTGCGGCTCAGGCGTTGCGCGAGGTGTTGATCGAGAATGCTCGCA
ACAGTCGATAG

Upstream 100 bases:

>100_bases
GCAGTCGCGCTGCCGGAGGATCGGGTGACCTGCATCTTCTCTCGGTGCGACTGATTTGTTAATTTTGTTTTTCTGATCAA
TTCATAAGAAAAGCAAATAT

Downstream 100 bases:

>100_bases
CGACTATCACGGCGGATGATTTTTGCTGTGTCAGGGGCAGGCGTAACCTTGCTTCATTCCTGAAATGAAGCCCCACCGGA
GGCCCCCGATGAACCGTATG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPEGETLLPLARQLLADWDNTEE
LLRQRFTLQMGRVSVAAMPSFAGNLLPAALKVFRGRYPRVNVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPF
YMDRFVAVVPRESPLAERREVTWAELLREDFIALQRPSAVRLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAV
PSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR

Sequences:

>Translated_296_residues
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPEGETLLPLARQLLADWDNTEE
LLRQRFTLQMGRVSVAAMPSFAGNLLPAALKVFRGRYPRVNVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPF
YMDRFVAVVPRESPLAERREVTWAELLREDFIALQRPSAVRLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAV
PSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR
>Mature_296_residues
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPEGETLLPLARQLLADWDNTEE
LLRQRFTLQMGRVSVAAMPSFAGNLLPAALKVFRGRYPRVNVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPF
YMDRFVAVVPRESPLAERREVTWAELLREDFIALQRPSAVRLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAV
PSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=35.5400696864112, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=32.8813559322034, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788887, Length=194, Percent_Identity=35.0515463917526, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=26.4604810996564, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=26.1016949152542, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787879, Length=304, Percent_Identity=29.6052631578947, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=27.8008298755187, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=25.7028112449799, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=299, Percent_Identity=24.7491638795987, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=26.9896193771626, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787601, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=29.3785310734463, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=36.0655737704918, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787589, Length=172, Percent_Identity=30.2325581395349, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693193, Length=127, Percent_Identity=32.2834645669291, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25.4098360655738, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786401, Length=160, Percent_Identity=32.5, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=22.0735785953177, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788706, Length=184, Percent_Identity=30.9782608695652, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=159, Percent_Identity=29.559748427673, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32886; Mature: 32886

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
GETLLPLARQLLADWDNTEELLRQRFTLQMGRVSVAAMPSFAGNLLPAALKVFRGRYPRV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCEE
NVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPFYMDRFVAVVPRESPLAERRE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCHHHHHC
VTWAELLREDFIALQRPSAVRLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAV
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHH
PSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVKQLRAFLAVAQYLSFAQAGERLNVSQPALSLTIKSLEEDLGGQLLTRTTRNVGLTPE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
GETLLPLARQLLADWDNTEELLRQRFTLQMGRVSVAAMPSFAGNLLPAALKVFRGRYPRV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCEE
NVAVHDVINEQVLEMVRHRRVELGIGFEPESNSALSFTPFYMDRFVAVVPRESPLAERRE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCHHHHHC
VTWAELLREDFIALQRPSAVRLLLEQAIEPRHGKLAVAFESHQLSTIGRMVANGLGVSAV
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHH
PSLCIGQMQELGACCVALVEPLIERRIGLMMLADHKLSTAAQALREVLIENARNSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]