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The map label for this gene is rfbU [H]

Identifier: 66046458

GI number: 66046458

Start: 3867642

End: 3868757

Strand: Direct

Name: rfbU [H]

Synonym: Psyr_3229

Alternate gene names: 66046458

Gene position: 3867642-3868757 (Clockwise)

Preceding gene: 66046457

Following gene: 66046459

Centisome position: 63.47

GC content: 61.74

Gene sequence:

>1116_bases
ATGATTTTCATCAATGCACGGTTTCTTACCCAGGACATCAGTGGTGTACAGCGCTACGCAGAGCAGATGTGCCGAGCGCT
GAAGCGACTGCGCGACGATCTGGTATTCGTTGCCCCGCATAACATCAGACTGCATGACTGCGCCAGCGCACTGGAGGCGC
ACTGCATCGGGCGCTCCATCGGGCATGCGTGGGAGCAGATCGACCTGCCGCTGTACCTGAAACGTCGGGGCAGTCCGCTG
CTGATCTCGATCAGCAACACCGGGCCCATGCTGTATGGCAACCAGATTGCGACTCACCACGACATCAACTATGTGCGCTA
CCCGCAAAGTTACACCCGGCTGTTCCGGCTGGCCTATCGGACCATCACCCCGATCCTGCTGTCGCGCGCCAGAACGCTGA
TCACCGGCAGCCACTTCTCGCGCAAAGAAATATCCTCGTTCTATGGCTACGCAGAAGACAAGGTGCTCGTCGTCCCTGCT
GCGGTCAGCGACGATTTCATACCGGGGCCGACCGCTGTGAATCGTCCGAAATACCTGTTGGCCGTGTCTTCGCCGGCCGT
GCACAAGAATTTCAGACGGATGATTCAGGCCTTTCTCAGCCTGCGTGGCCACACGGATCTGCAGCTGCACATTGTCGGCG
CAGCCAGCGCGCTGTTCGCCGACCCGAACCTGCAACACCTCGCCTGCCGTGACCCGCGTATCCGTTTTCTGGGACGCCTC
AGTGACGCCGAGCTGATCGCGCAATACCAGGGCGCGACCGCGTTCGTGTTCCCGTCGCTTTACGAGGGCTTCGGCATCCC
GCCGCTCGAAGCCCAGGCCTGCGGCTGTCCGGTGCTGGCGGCCAATGCCGCGTCGATCCCGGAAGTTCTGCAGGCCAGTG
CGCTGTATTTCGACCCGCTGGACGTCAGTCACATGGCCGCAGCCATGCAGCGCATTCTGCTGGATGCGCCCTTGCGCAAC
GCGCTGCGTGTCCAGGGCCTGCAAAACGTGCAGCGTTTTTCCTGGGAGCTTTCCGCGCAACGCCTTTCCCAGCGCATCGA
TACGTTGCTGGCGTCTGACCCCGTGCAGCAAAGCAAGCTGCACGTCGCTGCCGACTCGCCCAGCGGCAAACCCTGA

Upstream 100 bases:

>100_bases
TGGCACAAAACACGGCGAACGGGCGCAATTGCCCCCTTTGACGACATCAAGGACATGGTGTGGCCCCCGCCAGCTCACCT
TCATCAGCAGGACGCTCAAG

Downstream 100 bases:

>100_bases
ACCCACAACAGCAACGCCAGGATGCGCGCCGTCGCGTCCGCAGTAGCGCGGGCCATTACAGCAAGGAACGCCCATGAGAA
TCGCTATCGTCCACGACTGG

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSIGHAWEQIDLPLYLKRRGSPL
LISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYRTITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPA
AVSDDFIPGPTAVNRPKYLLAVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPLDVSHMAAAMQRILLDAPLRN
ALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKLHVAADSPSGKP

Sequences:

>Translated_371_residues
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSIGHAWEQIDLPLYLKRRGSPL
LISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYRTITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPA
AVSDDFIPGPTAVNRPKYLLAVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPLDVSHMAAAMQRILLDAPLRN
ALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKLHVAADSPSGKP
>Mature_371_residues
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSIGHAWEQIDLPLYLKRRGSPL
LISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYRTITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPA
AVSDDFIPGPTAVNRPKYLLAVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPLDVSHMAAAMQRILLDAPLRN
ALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKLHVAADSPSGKP

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 41221; Mature: 41221

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSI
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHH
GHAWEQIDLPLYLKRRGSPLLISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYR
HHHHHHCCCCEEEECCCCEEEEEECCCCCEEECCCCCEECCCCEEECCHHHHHHHHHHHH
TITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPAAVSDDFIPGPTAVNRPKYLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
AVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
EECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHCCCCCCEEECCCCHHHHHHCC
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPL
CHHHHHHHHCCCEEEECHHHHHCCCCCCCCHHHCCCCEEECCCCCCHHHHHHHHHEECCC
DVSHMAAAMQRILLDAPLRNALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
HVAADSPSGKP
EEEECCCCCCC
>Mature Secondary Structure
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSI
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHH
GHAWEQIDLPLYLKRRGSPLLISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYR
HHHHHHCCCCEEEECCCCEEEEEECCCCCEEECCCCCEECCCCEEECCHHHHHHHHHHHH
TITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPAAVSDDFIPGPTAVNRPKYLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
AVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
EECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHCCCCCCEEECCCCHHHHHHCC
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPL
CHHHHHHHHCCCEEEECHHHHHCCCCCCCCHHHCCCCEEECCCCCCHHHHHHHHHEECCC
DVSHMAAAMQRILLDAPLRNALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
HVAADSPSGKP
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]