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The map label for this gene is ltrA [H]

Identifier: 66046417

GI number: 66046417

Start: 3818108

End: 3819013

Strand: Direct

Name: ltrA [H]

Synonym: Psyr_3188

Alternate gene names: 66046417

Gene position: 3818108-3819013 (Clockwise)

Preceding gene: 66046415

Following gene: 66046418

Centisome position: 62.66

GC content: 60.6

Gene sequence:

>906_bases
ATGGACCGTATTCAGGAAATGACGCTTTTTGCCGGACTTGCCGAGCAAACCAGTTTTGCCGGGGTAGCCCGCCACTTTGG
CCTGTCGACCGCCACGGTAACCCGGGCTGTCGCGAGTCTGGAGAGTCGCCTGGGCATCCTTCTGGTGGTGCGCACCACTC
GCAACATGCGGCTCACCGAGGCGGGCCAGCGCTTCGCCGCAGATTGCCGCCGACTGCTTGCCGACCTTGATGAGGCTGAA
AGCGCGGCGGGCGGCTTGCATGCGTTGCCAGGCGGCCTGCTGACGGTCACCGCACCTCAGATGTTCGGCGCGCTGCATGT
CGTGCCCGTAATGACGAGCTTTCTCGAGCGGTTTCCGGCTGTGGACATCCGTGCCATTCTGGTCGACCGGGTCGTGTCCA
TGCTCGATGAGGGCGTCGACGTGGCCGTCAGGATCGGCACCCTGCCCGATTCGTCTCTTACCGCAATCCAGACAGGTAGC
GTGCGGCGTATGGTTTGCGCATCCCCTGGCTATCTCGAAAAGCACGGAGTTCCGCAGCATCCCGACGATTTGCGACAGCA
TTCGACAGTTTCGACCAGCACCGCCGAACGCTCGCCTCACTGGCTTTTCCGGATCGACGACAAGCATTACTCAGTAGACG
TCGCATCGAGACTCAGCCTGACGTCGTATCAGGCGGCTATCAGCGCAGCATTGCAGGACTGGGGACTGACCCAGGTGCCG
TACTATCAGATACGCGAGCACCTGCAGGAAGGCAGGCTCAAGTGTGTTCTGGACACGTTCGAAATAATGCCGGAACCGGT
TCACGTTGTTTACCTGGAGGGCCGTCGTCGCTCATCCAAAGTGCGAGCCTTTGTGGACTTCTGCGTCAGCGCGCTGAGGC
ATGATCTGCAGTTCGAACACCCATAA

Upstream 100 bases:

>100_bases
ATTGCATGTAAGCTGCAGAATCACCGTAAAAATCAATTCACCATTTCAATTTCTGAAATACTGATACGACTCCACATCTC
TCGTGGCAGGCAGGCGGACC

Downstream 100 bases:

>100_bases
GCTGCTAAGGCTGACTCAATCCCCTGCAAGGAGCCCCATTATCATGACCTGGCAAGCCCACGTTACCGTCGCCACCATCG
TCGAAGATCAAGGCCGCTTT

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRFAADCRRLLADLDEAE
SAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPAVDIRAILVDRVVSMLDEGVDVAVRIGTLPDSSLTAIQTGS
VRRMVCASPGYLEKHGVPQHPDDLRQHSTVSTSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWGLTQVP
YYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDLQFEHP

Sequences:

>Translated_301_residues
MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRFAADCRRLLADLDEAE
SAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPAVDIRAILVDRVVSMLDEGVDVAVRIGTLPDSSLTAIQTGS
VRRMVCASPGYLEKHGVPQHPDDLRQHSTVSTSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWGLTQVP
YYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDLQFEHP
>Mature_301_residues
MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRFAADCRRLLADLDEAE
SAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPAVDIRAILVDRVVSMLDEGVDVAVRIGTLPDSSLTAIQTGS
VRRMVCASPGYLEKHGVPQHPDDLRQHSTVSTSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWGLTQVP
YYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDLQFEHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=31.2280701754386, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI145693193, Length=307, Percent_Identity=29.9674267100977, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=27.1777003484321, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=25.1748251748252, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=28.4722222222222, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=27.1477663230241, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=25.1700680272109, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789173, Length=287, Percent_Identity=23.6933797909408, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=22.5255972696246, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33291; Mature: 33291

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC
VDIRAILVDRVVSMLDEGVDVAVRIGTLPDSSLTAIQTGSVRRMVCASPGYLEKHGVPQH
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCC
PDDLRQHSTVSTSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWGLTQVP
HHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDLQFEH
HHHHHHHHHHCCCEEEEHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
P
C
>Mature Secondary Structure
MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC
VDIRAILVDRVVSMLDEGVDVAVRIGTLPDSSLTAIQTGSVRRMVCASPGYLEKHGVPQH
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCCHHHCCCCCC
PDDLRQHSTVSTSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWGLTQVP
HHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDLQFEH
HHHHHHHHHHCCCEEEEHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]