| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is icd [H]
Identifier: 66046415
GI number: 66046415
Start: 3814551
End: 3816773
Strand: Direct
Name: icd [H]
Synonym: Psyr_3186
Alternate gene names: 66046415
Gene position: 3814551-3816773 (Clockwise)
Preceding gene: 66046414
Following gene: 66046417
Centisome position: 62.6
GC content: 59.96
Gene sequence:
>2223_bases ATGTCCAACCGCTCGAAGATCATCTACACCTTCACCGACGAAGCTCCGGCCCTCGCCACCTACTCCCTGCTGCCCATTAT CGAAGCGTTCACAGCGACCTCCGATATCGACGTGGAAACACGCGACATTTCTCTGGCGGGCCGTGTTCTTTCCAGCTTCC CGGAATTGCTTGCCGACAAAAAAGTGCCGGATCATCTCGCCGAGCTGGGCAAACTGGCTACCACGCCAGAGGCCAATATC ATCAAGCTGCCTAACATAAGCGCCTCGGTCCCGCAATTGAAGGCGACCATCAAGGAGCTTCAGAATCAGGGCTACAACAT TCCTGACTACCCTGAAAACCCTGCCACTGACGCGGAAAAAGAAACCCGCGCACGCTACGACAAGACCAAGGGCAGCGCCG TGAACCCGGTTCTGCGCGAAGGCAATTCCGATCGCCGCGCCCCGCTGTCGGTCAAGAATTATGCGCGCAAGCACCCGCAC AAGATGGGCGCCTGGTCGGCTGACTCCAAGGCTCACGTTGCACACATGAGCAACGGCGACTTCTACGGCAGCGAAAAAGC CGCCGAGATCGCGGCCGACAATACCGTCAAGATCGAACTCGTCGCTCAGGACGGCACCACCACCGTCCTGAAGGAAAAAA CCGCCGTCAAGGCTGGCGAAGTCGTCGACTGCTCGGTCATGAGCGCCAAGGCCCTGCGCAGCTTCATTGCTGCCGAAATC GAAGACGCCCGCAAGCAGGGCGTGCTGTTTTCGGTGCACTTGAAAGCCACCATGATGAAGATCTCCGACCCGATCATGTT TGGCCAGATCGTCGACGAGTTCTATAAGGATGCGCTGACCAAGCACGCTGATACGCTCAAGCAGATCGGCTTCAGCCTGA ACAACGGCATCGGCGACCTATACGAGCGCATCACTGCCCTGCCCGCTGACAAGCAGGCAGAGATCAAGGCTGACATCGAA GCGGTCTACGCCGTTCGCCCACAGCTGGCGATGGTCAATTCCGACAAGGGCATCACCAACCTGCACGTGCCGAGCGACGT CATCGTCGACGCCTCGATGCCGGCAATGATCCGTGACTCCGGCAAGATGTGGGGCACAGACGGTCAGTTGCACGATGCCA AGGCCGTCATTCCGGATCGCTGCTACGCCACCATCTATCAAGCGGTCATCGAAGACTGCAAGAAAAATGGCGCATTCGAC CCGACCACCATGGGCAGCGTACCGAACGTCGGCCTGATGGCTCAGAAGGCCGAAGAGTATGGCTCCCACGACAAGACGTT CCACATTCAGACCAACGGCGTGGTTCGCGTAACCGACATCCAGGGCAACCTGCTGATGGAACAGAACGTCGAAGCCGGCG ATATCTGGCGCATGTGCCAGGCCAAGGACGCACCGATCCAGGACTGGGTGAAACTGGCCGTCAACCGTGCCCGCGCCAGC AACACCCCGGCTATCTTCTGGCTGGACTCATCCCGCGCCCACGACAGCGTGATGATCGAAAAAGTGCGCAAGTACCTGGG CGACCACGACACCTCGGGCCTGGATATCCAGATCCTGTCACCTGTCGACGCGATGAAGCTGACCCTGGAACGCACGCGCG CAGGCAAGGACACCATTTCGGTGACCGGCAACGTTCTGCGCGACTACCTGACTGACCTGTTCCCGATCATGGAACTGGGC ACCAGCGCGAAGATGCTGTCGATCGTTCCGCTGATGAACGGCGGCGGTCTGTTCGAAACAGGCGCCGGTGGGTCGGCTCC GAAGCACGTGCAGCAGTTCGTCGAGGAAAACTTCCTGCGCTGGGATTCGCTGGGCGAATTCCTGGCCCTGGCGGCGTCCC TCGAGCATCTGGGCCATGCCTACAACAATCCGAAAGCGCTGGTTCTGTCCAAGACCCTCGATCAGGCCACTGGCGAGTTC CTGGACCGTAACAAGTCGCCTTCGCGCAAGGTCGGCGGTATCGATAACCGCGGCAGCCACTTCTACCTGACCCTGTTCTG GGCCCAGGCACTGGCTGCTCAGAACGACGACGCAGACCTCAAGGCGCAGTTCGCGCCGCTGGCCAAGACCCTGACCGACA ACGAAGAAAAAATCGTTGCCGAGCTGAACGCCGTTCAGGGCAAGCCGGTGGACATTGGCGGCTACTACTTCCCTAACCCG GAAGTCACCAGCAAGGCCATGCGCCCGAGCGCCACGCTCAACGCGGCCATCGCCGCGCTGTAA
Upstream 100 bases:
>100_bases AATAAACCTCGACCTGGCTCATGGCCGAACCGTGGGCAAGCGCGCCTACAATGCGCGTATCGAGATTTTGTGCATGCTCA GCAAAAGAGAGTTAATACGA
Downstream 100 bases:
>100_bases GAGGCAATCCAAGGCGGCGCATAAAAAATGCACCGTCTCACAAAAAAATCCCCGGCCTGTTGCCGGGGATTTTTTTATCC ATGGAAAATGTCAGCTACCT
Product: isocitrate dehydrogenase NADP-dependent, monomeric type
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 740; Mature: 739
Protein sequence:
>740_residues MSNRSKIIYTFTDEAPALATYSLLPIIEAFTATSDIDVETRDISLAGRVLSSFPELLADKKVPDHLAELGKLATTPEANI IKLPNISASVPQLKATIKELQNQGYNIPDYPENPATDAEKETRARYDKTKGSAVNPVLREGNSDRRAPLSVKNYARKHPH KMGAWSADSKAHVAHMSNGDFYGSEKAAEIAADNTVKIELVAQDGTTTVLKEKTAVKAGEVVDCSVMSAKALRSFIAAEI EDARKQGVLFSVHLKATMMKISDPIMFGQIVDEFYKDALTKHADTLKQIGFSLNNGIGDLYERITALPADKQAEIKADIE AVYAVRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDAKAVIPDRCYATIYQAVIEDCKKNGAFD PTTMGSVPNVGLMAQKAEEYGSHDKTFHIQTNGVVRVTDIQGNLLMEQNVEAGDIWRMCQAKDAPIQDWVKLAVNRARAS NTPAIFWLDSSRAHDSVMIEKVRKYLGDHDTSGLDIQILSPVDAMKLTLERTRAGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENFLRWDSLGEFLALAASLEHLGHAYNNPKALVLSKTLDQATGEF LDRNKSPSRKVGGIDNRGSHFYLTLFWAQALAAQNDDADLKAQFAPLAKTLTDNEEKIVAELNAVQGKPVDIGGYYFPNP EVTSKAMRPSATLNAAIAAL
Sequences:
>Translated_740_residues MSNRSKIIYTFTDEAPALATYSLLPIIEAFTATSDIDVETRDISLAGRVLSSFPELLADKKVPDHLAELGKLATTPEANI IKLPNISASVPQLKATIKELQNQGYNIPDYPENPATDAEKETRARYDKTKGSAVNPVLREGNSDRRAPLSVKNYARKHPH KMGAWSADSKAHVAHMSNGDFYGSEKAAEIAADNTVKIELVAQDGTTTVLKEKTAVKAGEVVDCSVMSAKALRSFIAAEI EDARKQGVLFSVHLKATMMKISDPIMFGQIVDEFYKDALTKHADTLKQIGFSLNNGIGDLYERITALPADKQAEIKADIE AVYAVRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDAKAVIPDRCYATIYQAVIEDCKKNGAFD PTTMGSVPNVGLMAQKAEEYGSHDKTFHIQTNGVVRVTDIQGNLLMEQNVEAGDIWRMCQAKDAPIQDWVKLAVNRARAS NTPAIFWLDSSRAHDSVMIEKVRKYLGDHDTSGLDIQILSPVDAMKLTLERTRAGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENFLRWDSLGEFLALAASLEHLGHAYNNPKALVLSKTLDQATGEF LDRNKSPSRKVGGIDNRGSHFYLTLFWAQALAAQNDDADLKAQFAPLAKTLTDNEEKIVAELNAVQGKPVDIGGYYFPNP EVTSKAMRPSATLNAAIAAL >Mature_739_residues SNRSKIIYTFTDEAPALATYSLLPIIEAFTATSDIDVETRDISLAGRVLSSFPELLADKKVPDHLAELGKLATTPEANII KLPNISASVPQLKATIKELQNQGYNIPDYPENPATDAEKETRARYDKTKGSAVNPVLREGNSDRRAPLSVKNYARKHPHK MGAWSADSKAHVAHMSNGDFYGSEKAAEIAADNTVKIELVAQDGTTTVLKEKTAVKAGEVVDCSVMSAKALRSFIAAEIE DARKQGVLFSVHLKATMMKISDPIMFGQIVDEFYKDALTKHADTLKQIGFSLNNGIGDLYERITALPADKQAEIKADIEA VYAVRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGTDGQLHDAKAVIPDRCYATIYQAVIEDCKKNGAFDP TTMGSVPNVGLMAQKAEEYGSHDKTFHIQTNGVVRVTDIQGNLLMEQNVEAGDIWRMCQAKDAPIQDWVKLAVNRARASN TPAIFWLDSSRAHDSVMIEKVRKYLGDHDTSGLDIQILSPVDAMKLTLERTRAGKDTISVTGNVLRDYLTDLFPIMELGT SAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENFLRWDSLGEFLALAASLEHLGHAYNNPKALVLSKTLDQATGEFL DRNKSPSRKVGGIDNRGSHFYLTLFWAQALAAQNDDADLKAQFAPLAKTLTDNEEKIVAELNAVQGKPVDIGGYYFPNPE VTSKAMRPSATLNAAIAAL
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80647; Mature: 80516
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRSKIIYTFTDEAPALATYSLLPIIEAFTATSDIDVETRDISLAGRVLSSFPELLADK CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCC KVPDHLAELGKLATTPEANIIKLPNISASVPQLKATIKELQNQGYNIPDYPENPATDAEK CCHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH ETRARYDKTKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKAHVAHMSNGD HHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCC FYGSEKAAEIAADNTVKIELVAQDGTTTVLKEKTAVKAGEVVDCSVMSAKALRSFIAAEI CCCCCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH EDARKQGVLFSVHLKATMMKISDPIMFGQIVDEFYKDALTKHADTLKQIGFSLNNGIGDL HHHHHCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHH YERITALPADKQAEIKADIEAVYAVRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDS HHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHCC GKMWGTDGQLHDAKAVIPDRCYATIYQAVIEDCKKNGAFDPTTMGSVPNVGLMAQKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH GSHDKTFHIQTNGVVRVTDIQGNLLMEQNVEAGDIWRMCQAKDAPIQDWVKLAVNRARAS CCCCCEEEEECCCEEEEEECCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCC NTPAIFWLDSSRAHDSVMIEKVRKYLGDHDTSGLDIQILSPVDAMKLTLERTRAGKDTIS CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEE VTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENFLR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH WDSLGEFLALAASLEHLGHAYNNPKALVLSKTLDQATGEFLDRNKSPSRKVGGIDNRGSH HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE FYLTLFWAQALAAQNDDADLKAQFAPLAKTLTDNEEKIVAELNAVQGKPVDIGGYYFPNP EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCEECCCC EVTSKAMRPSATLNAAIAAL CHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure SNRSKIIYTFTDEAPALATYSLLPIIEAFTATSDIDVETRDISLAGRVLSSFPELLADK CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCC KVPDHLAELGKLATTPEANIIKLPNISASVPQLKATIKELQNQGYNIPDYPENPATDAEK CCHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH ETRARYDKTKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKAHVAHMSNGD HHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCC FYGSEKAAEIAADNTVKIELVAQDGTTTVLKEKTAVKAGEVVDCSVMSAKALRSFIAAEI CCCCCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH EDARKQGVLFSVHLKATMMKISDPIMFGQIVDEFYKDALTKHADTLKQIGFSLNNGIGDL HHHHHCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHH YERITALPADKQAEIKADIEAVYAVRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDS HHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHCC GKMWGTDGQLHDAKAVIPDRCYATIYQAVIEDCKKNGAFDPTTMGSVPNVGLMAQKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH GSHDKTFHIQTNGVVRVTDIQGNLLMEQNVEAGDIWRMCQAKDAPIQDWVKLAVNRARAS CCCCCEEEEECCCEEEEEECCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCC NTPAIFWLDSSRAHDSVMIEKVRKYLGDHDTSGLDIQILSPVDAMKLTLERTRAGKDTIS CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEE VTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENFLR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH WDSLGEFLALAASLEHLGHAYNNPKALVLSKTLDQATGEFLDRNKSPSRKVGGIDNRGSH HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE FYLTLFWAQALAAQNDDADLKAQFAPLAKTLTDNEEKIVAELNAVQGKPVDIGGYYFPNP EEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCEECCCC EVTSKAMRPSATLNAAIAAL CHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]