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The map label for this gene is yccA [C]

Identifier: 66046393

GI number: 66046393

Start: 3793117

End: 3793788

Strand: Reverse

Name: yccA [C]

Synonym: Psyr_3164

Alternate gene names: 66046393

Gene position: 3793788-3793117 (Counterclockwise)

Preceding gene: 66046395

Following gene: 66046392

Centisome position: 62.26

GC content: 56.99

Gene sequence:

>672_bases
ATGCGCGAACAGGATTACAGCCTTAAAACCGGCATGCAGGCCGACCAGCTCGAGGTTAGTCGTGTCCTGCGCAATACTTA
CGGTCTTCTCGCCCTGACACTGGCTTTCAGTGGTGTCATGGCCTTCGTCGCTCAGCAGATGCGCGTCGGCTACCCGAACA
TTTTCGTGGTGCTGATCGGCTTCTACGGTCTGTTCTTCCTGACCAACAAGCTGCGTGATTCGGTCTGGGGTCTGGTGTCG
ACCTTCGCCCTGACAGGTTTCATGGGGTTCCTGCTGGGCCCGATCCTCAACCGTTACCTGGGCATGGCCGGGGGGGCTGA
AGTGGTCAGCTCCGCCTTCGCGATGACGGCTCTGGTATTCGGCGGTCTTTCGGCCTATGTACTGATCACTCGCAAGGACA
TGAGCTTCCTGGGTGGTTTCATTACCGCAGGTTTCTTTGTCCTGCTGGGTGCAGTAGTGGCCAGCATGTTCTTCCAGATC
AGCGGTCTGCAACTGGCTATCAGCGCGGGCTTCGTGCTGTTCTCGTCGGTCTGCATTCTGTTCCAGACCAGCGCGATCAT
TCAGGGTGGCGAGCGTAACTACATCATGGCGACGGTCAGCCTGTATGTATCGATCTATAACCTGTTCATCAGCCTGCTGC
AGATCTTCGGCATCATGAGCCGCGACGACTGA

Upstream 100 bases:

>100_bases
TACCGGAATGAAACAAGCTGTCAAACTCTGTGACTAGCCAGTTGCAGCGCCTCTGTTATGATCTTTGCAACTCAACATTT
CAACAGCAAGGAGTTTCGCC

Downstream 100 bases:

>100_bases
TTTACCTGGCCTGAACATTCAGGCCACTGCGCTTCAACAAAAGCCCCGACTCGTCGGGGCTTTTTGCGTTTCTGTGTCGG
GGAAAAGTGTCAGCTTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MREQDYSLKTGMQADQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIGFYGLFFLTNKLRDSVWGLVS
TFALTGFMGFLLGPILNRYLGMAGGAEVVSSAFAMTALVFGGLSAYVLITRKDMSFLGGFITAGFFVLLGAVVASMFFQI
SGLQLAISAGFVLFSSVCILFQTSAIIQGGERNYIMATVSLYVSIYNLFISLLQIFGIMSRDD

Sequences:

>Translated_223_residues
MREQDYSLKTGMQADQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIGFYGLFFLTNKLRDSVWGLVS
TFALTGFMGFLLGPILNRYLGMAGGAEVVSSAFAMTALVFGGLSAYVLITRKDMSFLGGFITAGFFVLLGAVVASMFFQI
SGLQLAISAGFVLFSSVCILFQTSAIIQGGERNYIMATVSLYVSIYNLFISLLQIFGIMSRDD
>Mature_223_residues
MREQDYSLKTGMQADQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIGFYGLFFLTNKLRDSVWGLVS
TFALTGFMGFLLGPILNRYLGMAGGAEVVSSAFAMTALVFGGLSAYVLITRKDMSFLGGFITAGFFVLLGAVVASMFFQI
SGLQLAISAGFVLFSSVCILFQTSAIIQGGERNYIMATVSLYVSIYNLFISLLQIFGIMSRDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=210, Percent_Identity=55.2380952380952, Blast_Score=211, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 24289; Mature: 24289

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREQDYSLKTGMQADQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIG
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FYGLFFLTNKLRDSVWGLVSTFALTGFMGFLLGPILNRYLGMAGGAEVVSSAFAMTALVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GGLSAYVLITRKDMSFLGGFITAGFFVLLGAVVASMFFQISGLQLAISAGFVLFSSVCIL
HCHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FQTSAIIQGGERNYIMATVSLYVSIYNLFISLLQIFGIMSRDD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MREQDYSLKTGMQADQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIG
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FYGLFFLTNKLRDSVWGLVSTFALTGFMGFLLGPILNRYLGMAGGAEVVSSAFAMTALVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GGLSAYVLITRKDMSFLGGFITAGFFVLLGAVVASMFFQISGLQLAISAGFVLFSSVCIL
HCHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FQTSAIIQGGERNYIMATVSLYVSIYNLFISLLQIFGIMSRDD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8469112; 10984043 [H]