Click here to switch to the map view.

The map label for this gene is ydbC [H]

Identifier: 66046281

GI number: 66046281

Start: 3647777

End: 3648640

Strand: Reverse

Name: ydbC [H]

Synonym: Psyr_3050

Alternate gene names: 66046281

Gene position: 3648640-3647777 (Counterclockwise)

Preceding gene: 66046283

Following gene: 66046279

Centisome position: 59.88

GC content: 60.42

Gene sequence:

>864_bases
ATGAATCATGCAAACAAGGCAGGTACGTTCCTGTTGGGCAGCCATCGCGTCAACCGCATGGGCTATGGCGCGATGCAACT
GGCCGGGCCTGGCGTGTTCGGTCCTGCAAAAGATCCGCAGGGCGCCATCGCGGTATTGCGCGAAGCCCTCGCCCTGGGGG
TAAACCATATCGATACCGCAGACTTTTACGGCCCGCATGTCACCAATACGCTGATTCGCGAAGCGCTGCACCCTTACGCG
GATGACTTGCTGATCGTCACCAAGGTCGGCGCAGTGCGTGGCGCGGATGCTTCATGGAATCCTGCATCCAGCCCGGCGCA
ATTGACCGCGGCGGTCCACGACAACCTGAAGAACCTCGGGCTGGAGGTGCTCGATGTGGTCAACTTCCGGGCATGGGGCG
AGCAGCATTCACCCGCAGAAGGCTCGATCGAGGAACCGTTGACGGTGCTGGCCGAGTTGCAGCGCCAGGGTCTGATCCGT
CATCTCGGGGTCAGTAACGTCACTGCCCGGCAAGTCAGGCAGGCGCAGGGGATTGCCGAGATTGTCTGCGTGCAGAATCA
CTACAACCTTTCGCATCGCCATGACGAGCCGCTGATTGCAGAACTGGGCGAGCAGGGCATTGCGTATGTCCCGTTCTTCC
CGATGGGCGGATTTTCACCCCTGCAATCGGAAACCCTGAGCCGAGTAGCCGCTGGGCTGAATGCCTCGCCGTCGTGTGTC
GCTCTGGCCTGGTTGCTGCAACGTGCGCCCAATATTCTGCTGATTCCGGGCACCTCATCCATCGCTCATTTGCGCGAAAA
CCTTGCCGCCAGCGAGCTGGTGATTGCGCCGCAATTGCTCGCCGAACTCGATAGTGTTGCTTAG

Upstream 100 bases:

>100_bases
GTGTTCGCTCAGGCGTACAGGTTGTGCCGATTACGCATGATTATCAATACAGTGCTCAGTGCCTATAGTGAGGAACACAC
ATCGAATCAAGGGGCACGAA

Downstream 100 bases:

>100_bases
AGGGATAGCTGTTGAGCAACCCACCTGAATGCTTTCGGGTGGGTCTGTTTTAAAGGCTGCTGCTCAATCAGAGCCTGCCT
TCCTCGCGCAACAGTGCGCC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNHANKAGTFLLGSHRVNRMGYGAMQLAGPGVFGPAKDPQGAIAVLREALALGVNHIDTADFYGPHVTNTLIREALHPYA
DDLLIVTKVGAVRGADASWNPASSPAQLTAAVHDNLKNLGLEVLDVVNFRAWGEQHSPAEGSIEEPLTVLAELQRQGLIR
HLGVSNVTARQVRQAQGIAEIVCVQNHYNLSHRHDEPLIAELGEQGIAYVPFFPMGGFSPLQSETLSRVAAGLNASPSCV
ALAWLLQRAPNILLIPGTSSIAHLRENLAASELVIAPQLLAELDSVA

Sequences:

>Translated_287_residues
MNHANKAGTFLLGSHRVNRMGYGAMQLAGPGVFGPAKDPQGAIAVLREALALGVNHIDTADFYGPHVTNTLIREALHPYA
DDLLIVTKVGAVRGADASWNPASSPAQLTAAVHDNLKNLGLEVLDVVNFRAWGEQHSPAEGSIEEPLTVLAELQRQGLIR
HLGVSNVTARQVRQAQGIAEIVCVQNHYNLSHRHDEPLIAELGEQGIAYVPFFPMGGFSPLQSETLSRVAAGLNASPSCV
ALAWLLQRAPNILLIPGTSSIAHLRENLAASELVIAPQLLAELDSVA
>Mature_287_residues
MNHANKAGTFLLGSHRVNRMGYGAMQLAGPGVFGPAKDPQGAIAVLREALALGVNHIDTADFYGPHVTNTLIREALHPYA
DDLLIVTKVGAVRGADASWNPASSPAQLTAAVHDNLKNLGLEVLDVVNFRAWGEQHSPAEGSIEEPLTVLAELQRQGLIR
HLGVSNVTARQVRQAQGIAEIVCVQNHYNLSHRHDEPLIAELGEQGIAYVPFFPMGGFSPLQSETLSRVAAGLNASPSCV
ALAWLLQRAPNILLIPGTSSIAHLRENLAASELVIAPQLLAELDSVA

Specific function: Unknown

COG id: COG0667

COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldo/keto reductase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787674, Length=283, Percent_Identity=68.904593639576, Blast_Score=403, Evalue=1e-114,
Organism=Escherichia coli, GI87081735, Length=310, Percent_Identity=28.0645161290323, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788070, Length=294, Percent_Identity=26.8707482993197, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788081, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786400, Length=251, Percent_Identity=27.4900398406374, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789199, Length=336, Percent_Identity=27.3809523809524, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789375, Length=300, Percent_Identity=25, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001395
- InterPro:   IPR023210 [H]

Pfam domain/function: PF00248 Aldo_ket_red [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30556; Mature: 30556

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHANKAGTFLLGSHRVNRMGYGAMQLAGPGVFGPAKDPQGAIAVLREALALGVNHIDTA
CCCCCCCCEEEECCCHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
DFYGPHVTNTLIREALHPYADDLLIVTKVGAVRGADASWNPASSPAQLTAAVHDNLKNLG
HHCCCHHHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LEVLDVVNFRAWGEQHSPAEGSIEEPLTVLAELQRQGLIRHLGVSNVTARQVRQAQGIAE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
IVCVQNHYNLSHRHDEPLIAELGEQGIAYVPFFPMGGFSPLQSETLSRVAAGLNASPSCV
EEEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHH
ALAWLLQRAPNILLIPGTSSIAHLRENLAASELVIAPQLLAELDSVA
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNHANKAGTFLLGSHRVNRMGYGAMQLAGPGVFGPAKDPQGAIAVLREALALGVNHIDTA
CCCCCCCCEEEECCCHHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
DFYGPHVTNTLIREALHPYADDLLIVTKVGAVRGADASWNPASSPAQLTAAVHDNLKNLG
HHCCCHHHHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LEVLDVVNFRAWGEQHSPAEGSIEEPLTVLAELQRQGLIRHLGVSNVTARQVRQAQGIAE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
IVCVQNHYNLSHRHDEPLIAELGEQGIAYVPFFPMGGFSPLQSETLSRVAAGLNASPSCV
EEEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHH
ALAWLLQRAPNILLIPGTSSIAHLRENLAASELVIAPQLLAELDSVA
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1665988; 9097039; 9278503; 9748275 [H]