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The map label for this gene is yafC [H]

Identifier: 66046279

GI number: 66046279

Start: 3645849

End: 3646760

Strand: Reverse

Name: yafC [H]

Synonym: Psyr_3048

Alternate gene names: 66046279

Gene position: 3646760-3645849 (Counterclockwise)

Preceding gene: 66046281

Following gene: 66046271

Centisome position: 59.84

GC content: 61.73

Gene sequence:

>912_bases
GTGGCGTTCGATCTCAACGATGTTGCGCTGTTCGTGCAGGTGGTGCGCAGCGGCAGTTTTGCCCAGGCAGCAAGGCACTT
GGGCATGCCGTCCAATACGGTCAGTCGCAGGGTTCAGCAACTGGAGATGCAGCTGGACACTCGCCTGTTGCAGCGCTCGA
CCCGCAAGCTGGTGCTCACTCAGGCTGGAGAGGATTTCTATGGCCGCTGCGTGAGCGCGGTGGACGGGGTGATGGAAGCC
GCAGAGCAGCTTGTGTCAGGTCGTGACGAGCCGCGCGGCCTGGTGCGTATTGCAGCGATGGCTGATTTCTTCGACTTTTT
CTCGATGGACTGGGTGGCCGGTTTTCTTGCCCGTTACCCGCGTGTTCAACTGGAGTTCGTGCTCAGTGATGATCACGCCG
ACCTGATCGCCGACCGGCTGGACATCGCCTTTCGCGGTGGCTCCTTGCAGGACTCGGGGTACGTAGGGCGGCAACTGATC
GATGAAGGCCATGACACGATGGTCGCCAGTCCGGCTTATATTGCCGCTCATGGCCTGCCTGATTCCCTGCACAGCCTGCA
CGGTCATTACTGTGTCAGTGCAGCGCATCGCGGTGGCGTCACTGCCTGGCGGTTGCTCGGCCCGGAGGCGAAGATGCATG
AGGTGCACATTGCCAGCCGGTTCAATGCCAACACCGCACAGGCGTTGCGCAAGGCGACCCTTGCCGGGCTCGGTATCGCG
TTGTTGCCCGCGACGCTGATCCGCTCGGATCTGCGGGATGGTCGACTGGTGCCGGTACTGACGCAGTACCAGCGCACCAG
CCATGGTCTGCATGTGCTTTATCCCAGCCGACAGCATCTGCCGCCAGCGGTGTCGGCATTCATTGCGTTGGTGATGGACA
AACTCAGGGACAAGGCGTTTCCGGCGCGCTGA

Upstream 100 bases:

>100_bases
TGGGCCTTGATGCCTGAGCGCAAAGAATAAGCGTCAATGGATTGCTTGATTAGCCGGTATAGTTCGCTTGGACTGATCCA
TAAATACGAGGAATCCGCGC

Downstream 100 bases:

>100_bases
ACAGCCTTGGCGGCACGCGATACTTGCGCGTTACTTGATTCGTGACGTCATGTAGATCAGCCGAACAGTGGCGACGGTGA
TCGCTTCGGCGTCGTTCTTG

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLTQAGEDFYGRCVSAVDGVMEA
AEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYPRVQLEFVLSDDHADLIADRLDIAFRGGSLQDSGYVGRQLI
DEGHDTMVASPAYIAAHGLPDSLHSLHGHYCVSAAHRGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGLGIA
LLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRDKAFPAR

Sequences:

>Translated_303_residues
MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLTQAGEDFYGRCVSAVDGVMEA
AEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYPRVQLEFVLSDDHADLIADRLDIAFRGGSLQDSGYVGRQLI
DEGHDTMVASPAYIAAHGLPDSLHSLHGHYCVSAAHRGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGLGIA
LLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRDKAFPAR
>Mature_302_residues
AFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLTQAGEDFYGRCVSAVDGVMEAA
EQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYPRVQLEFVLSDDHADLIADRLDIAFRGGSLQDSGYVGRQLID
EGHDTMVASPAYIAAHGLPDSLHSLHGHYCVSAAHRGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGLGIAL
LPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRDKAFPAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=255, Percent_Identity=34.9019607843137, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=31.6151202749141, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=28.7671232876712, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693193, Length=308, Percent_Identity=31.1688311688312, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789440, Length=263, Percent_Identity=26.9961977186312, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=28.3276450511945, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787589, Length=302, Percent_Identity=26.8211920529801, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=25.7627118644068, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=25.1700680272109, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788706, Length=304, Percent_Identity=24.3421052631579, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=312, Percent_Identity=26.6025641025641, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=253, Percent_Identity=24.5059288537549, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33353; Mature: 33221

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT
CCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
QAGEDFYGRCVSAVDGVMEAAEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVQLEFVLSDDHADLIADRLDIAFRGGSLQDSGYVGRQLIDEGHDTMVASPAYIAAHGLP
CEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCEEECCHHHEECCCC
DSLHSLHGHYCVSAAHRGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGLGIA
HHHHHHCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRDKAF
HHHHHHHHHHCCCCCEEHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
PAR
CCC
>Mature Secondary Structure 
AFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
QAGEDFYGRCVSAVDGVMEAAEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVQLEFVLSDDHADLIADRLDIAFRGGSLQDSGYVGRQLIDEGHDTMVASPAYIAAHGLP
CEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCEEECCHHHEECCCC
DSLHSLHGHYCVSAAHRGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGLGIA
HHHHHHCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRDKAF
HHHHHHHHHHCCCCCEEHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
PAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]