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The map label for this gene is xerD [H]

Identifier: 66046207

GI number: 66046207

Start: 3568468

End: 3569427

Strand: Reverse

Name: xerD [H]

Synonym: Psyr_2976

Alternate gene names: 66046207

Gene position: 3569427-3568468 (Counterclockwise)

Preceding gene: 66046209

Following gene: 66046206

Centisome position: 58.58

GC content: 62.08

Gene sequence:

>960_bases
ATGAATGACGTTGATCGCTATATCGAGGCGGCGACCCGCGACAACACGCGCCGCAGCTATCGGGCTGCCATCGAGCATTT
CGAGGTGACATGGGGCGGCTTTCTGCCGGCGACCAGCGAAAGCGTGGCGCGTTACCTGGCCAGCCACGCGGGAACGCTGT
CGGTCAATACCCTGAAGCTGCGCTTGTCAGCGCTGGCCCAGTGGCATGTCAGCCAGGGTTTTGTCGATCCCACCAAGGCA
CCGATGGTGCGCAAGGTCATCAAGGGCATTCGTGCGCTGCATCCTGCGCAGGAAAAGCAGGCCGAGCCATTGCAGCTACA
GGATCTGGAAAAAGTCATCGCCTGGCTGGAGATCGAGATACACGAGGCGAAGGCGCAACACGACCAGCCGCGTCTGTTAC
GCGGTCGACGTGATTCGGCGTTGATCCTGCTGGGGTTCTGGCGCGGGTTTCGCAGCGACGAGCTTTGCCGCCTGCAAATA
CAGGACGTCAAGGCCATCGCCGACTCGGGAATCAGCCTTTATCTGCCGCGCAGCAAGGGTGATCGCGACAACCTGGGCCG
GACCTATCAGACCCCCGCGTTGCAGCGGCTGTGCCCGGTGCAGGCCTATATAGAGTGGATCAACTGTGCCGCGCTAGTGC
GCGGGCCGGTGTTTCGGGCCGTGGACCGCTGGGGTAATCTAAGCGAGGAGGGGTTGCACGCCAACAGCGTCATCCCGTTG
CTGCGTCAGGCCCTCCAGCGTGCAGGCATCGCCGCCGAGCACTACACCAGCCACTCGCTGCGCCGTGGCTTCGCCAGTTG
GGCGCACAGCAACGGCTGGGACCTCAAGTCACTGATGTCCTATGTAGGCTGGAGGGACATCAAGTCGGCGATGCGCTACA
TTGATGCCGCTCCGTTCCTGAGCCCATCGGAGGCGGGGAGCGGTCCGAAGGTTTCTTCTATCAATAAGCTGCCTTCATAG

Upstream 100 bases:

>100_bases
TTGAATTAATTAACGCGGGATATTGGCGTATTATCCCGTGTCAGGCGCTGTCAGCTCCCTTTGACGCGTCGCTACCGGTA
CACCCGAGCAGGTTTGAGCC

Downstream 100 bases:

>100_bases
TGAAAAGCAATCAGTGACATCAGGTTTGCCAATGAGCGATTGTCATCGATCATGCGTAAGCTTCACTTCATCGAATTCAC
AACCCATCCAACCCATCAGG

Product: Phage integrase:Phage integrase, N-terminal SAM-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKLRLSALAQWHVSQGFVDPTKA
PMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEIHEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQI
QDVKAIADSGISLYLPRSKGDRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL
LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAAPFLSPSEAGSGPKVSSINKLPS

Sequences:

>Translated_319_residues
MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKLRLSALAQWHVSQGFVDPTKA
PMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEIHEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQI
QDVKAIADSGISLYLPRSKGDRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL
LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAAPFLSPSEAGSGPKVSSINKLPS
>Mature_319_residues
MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKLRLSALAQWHVSQGFVDPTKA
PMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEIHEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQI
QDVKAIADSGISLYLPRSKGDRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL
LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAAPFLSPSEAGSGPKVSSINKLPS

Specific function: Fimb Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fimb Switches

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35799; Mature: 35799

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEHHHHHH
RLSALAQWHVSQGFVDPTKAPMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHH
HEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQIQDVKAIADSGISLYLPRSKG
HHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCC
DRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAAPFL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCC
SPSEAGSGPKVSSINKLPS
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEHHHHHH
RLSALAQWHVSQGFVDPTKAPMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHH
HEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQIQDVKAIADSGISLYLPRSKG
HHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCC
DRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAAPFL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCC
SPSEAGSGPKVSSINKLPS
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]