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The map label for this gene is patM [H]

Identifier: 66046175

GI number: 66046175

Start: 3534510

End: 3535175

Strand: Reverse

Name: patM [H]

Synonym: Psyr_2944

Alternate gene names: 66046175

Gene position: 3535175-3534510 (Counterclockwise)

Preceding gene: 66046176

Following gene: 66046174

Centisome position: 58.01

GC content: 57.21

Gene sequence:

>666_bases
ATGACCTTCGATTACGCATTTGCCATTTCCACGCTGCCTGCTTTCCTCAAAGCTATCGGTGTCACCCTCCAGGTGGGGCT
GATTGCAATTCTGACCTCACTGACGGTGGCGGTTGTCAACGCGGCGATTGCTACATTCAAGGTGCCGGTCCTGCACCGGC
TGGTGCCGGTTTATGTTGAGCTGGCACGCAACACGCCGTTGCTGATTCAACTGTTCTTCATCTATTTCGCCTTGCCGACG
CTGGGGATTCGCGTGTCGGGTTTCGCGTCGGCAGTGATTGCCATGACCTTTCTCGGCGGTGCTTACCTGACCGAGATTCT
GCGCGCCGGCATAGAGGCCGTGCCCAAGACACAGATCGAGTCGGGGTTGTCCATCGGCCTGTCCCGCTGGCAGTTACTGC
GCCACGTGATTCTGCCGCAGGCGGGCATCCTCAGCCTGCCGGCACTGTTCGCCAATTTCGTCTTTCTGCTCAAGGAAACC
ACTGTGGTCTCGGCTGTCGCGGTGCCGGAAATTCTCTACACCACCAAGAGCTACATTGCCCTGTATTACAAAACCTACGA
GATGCTCGCGGTGATGACCGGTCTGTGTGTGTTGCTGTTCCTGCCGTTGTCTTTGTTGCTCGGTCTTCTGGAAAGGAGGC
TCCAGCATGGCCAGTTCGGGTCTTGA

Upstream 100 bases:

>100_bases
TTTTATGTAAAACATAAGGTTAAGCTATATATCAATACGTAAGTTCAAGGCCCTGCCTGATGTGTTTTCTGTCCGTTTAT
CCCGATGTGGAAGGCCAGCA

Downstream 100 bases:

>100_bases
GTTGTTGTGGGTGTCTGCGCCGCAGTTGATCACGGGGGCAGGGCGCACATTAGGGATTTCACTGTTGGCAATTGTCTTCA
GCAGTATTGGCGGCGTGGGT

Product: amino acid ABC transporter permease

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVELARNTPLLIQLFFIYFALPT
LGIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIESGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKET
TVVSAVAVPEILYTTKSYIALYYKTYEMLAVMTGLCVLLFLPLSLLLGLLERRLQHGQFGS

Sequences:

>Translated_221_residues
MTFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVELARNTPLLIQLFFIYFALPT
LGIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIESGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKET
TVVSAVAVPEILYTTKSYIALYYKTYEMLAVMTGLCVLLFLPLSLLLGLLERRLQHGQFGS
>Mature_220_residues
TFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVELARNTPLLIQLFFIYFALPTL
GIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIESGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKETT
VVSAVAVPEILYTTKSYIALYYKTYEMLAVMTGLCVLLFLPLSLLLGLLERRLQHGQFGS

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=29.9539170506912, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1788226, Length=163, Percent_Identity=36.8098159509202, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=25.1141552511416, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=28.0373831775701, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787087, Length=185, Percent_Identity=28.1081081081081, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788645, Length=169, Percent_Identity=31.3609467455621, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI48994930, Length=180, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082239, Length=146, Percent_Identity=29.4520547945205, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=24.0384615384615, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24063; Mature: 23932

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARNTPLLIQLFFIYFALPTLGIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIE
HHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKETTVVSAVAVPEILYTTKSYIA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYYKTYEMLAVMTGLCVLLFLPLSLLLGLLERRLQHGQFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARNTPLLIQLFFIYFALPTLGIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIE
HHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKETTVVSAVAVPEILYTTKSYIA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYYKTYEMLAVMTGLCVLLFLPLSLLLGLLERRLQHGQFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA