| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is yxlA [H]
Identifier: 66046153
GI number: 66046153
Start: 3510456
End: 3511925
Strand: Direct
Name: yxlA [H]
Synonym: Psyr_2922
Alternate gene names: 66046153
Gene position: 3510456-3511925 (Clockwise)
Preceding gene: 66046152
Following gene: 66046154
Centisome position: 57.61
GC content: 62.52
Gene sequence:
>1470_bases ATGACTACATCGTCCCCCTCTCAAGGTGCGGGTCAGCTGGAAACCCGCGGTATCGAGCCGGTTCCTGAAAACGAATGCAA CGGCCACCCGCTGCAGTTGTTCTGGGTCTGGTTCGCCGCCAATATCAGCATCCTCGGCTTGCCGCTCGGTGCCACCCTGG TGGCGTTCCAGGGGCTGGCCATCTGGCAGGCAATTATCGTCGCCATCCTCGGTGCCGCCGGCTCTTTCGCCGTGGTGGGC GTGATCTCCATTGCCGGGCGCCGCGGGCGAGCCCCGAGCCTGACGCTGTCCCGGGCCATCTTCGGGGTACGAGGCAATAT CGGTCCCACGCTGGTTTCGCTGATGTCGCGTCTGGGCTGGGAAACGGTCAACACCACCACCGCCGCTTTCGTCCTGCTGT CACTGTTCGCAATCCTTTTCGGCACCCCCGTGAAGGCGAAAAACTCGCCTGGCCTGACCCTGGTGTTCATCGCCTTATTC GTACTGCTGACCCTGACCGTCTCGGGTTTGGGCCATGCCACCTTGCTGGTCATCCAGAAATGGGCGACTTACCTGTTTGG CGCTCTGAACCTGGTGGTCGGTGGCTTTCTACTCACCCACATCGATTGGAGCCTGGTCTTCGACGCGCCGGCAGCGCCAC TGAGTGCCATGATTATTGGCGTCGGCACCATGGCCGCAGGCACCGGTATCGGTTGGGCCAATGCGGGCGCCGACATGTCG CGCTATCAGCACGCCAGCGTGAAGGCCACTCGCCTGGTGGCCTCGGCGGCACTTGGCGCAGGGATCCCTCTGGTTTTGCT GATCACCCTCGGCGGCTTGCTGTCGGTGGGCAACGATCATCTGGCGTCAGCCACCGACCCGATCATCGCCATTCGCGAGA TGTTGCCCACCTGGATGGCCGTGCCCTACCTGATCACGGCGTTCGGCGGCCTGCTGTTGTCCAACAACCTGTCGGTCTAC TCGGCCGGCCTGACGACCTTGACCCTCGGCCTGAAGGTCAAGCGAGTACACGCAGTCATCGTCGATATCATCGCGATCTT TGCCGGTTCGATCTACTTCATGCTGATCGCCGACAGCTTCTACGGCCCCTTCATTACGTTCATCTCGATGTTGGCAGTGC CCATTACCGCGTGGGTCGGCATCTTTGTCGTCGACCTGCTGCACCGCCACATCTACTCCCCAAAAGACCTGCTGGACCAG ACCCCACGCAGCGCTTACTGGTATCGCGGCGGCGTCGAATGGCGCGCGCTGGGCTCGTGGGCATTGGCAATCGTGCTTGG CTTCAGCTTCACCACCGTGGCCACCACCCCGGAGCATGTGCTGTTCAAAGGCTTCCTCGCCGATTCCTGGCTGGGCCATA ACGGCCTGGGCTGGATCGTGACCTTCATTGTCGCCGGTGGCCTGTATGCGCTGCTCGGCGGGGCGCGTGATCGCCGTGTC GTTACCGAAGAGGCTGCCCATGCCCGCTAA
Upstream 100 bases:
>100_bases GGCGATCGGGCTAACCCGATTTCGGAAAGCCAATTTGCACTGGATTGCACCTGCTGACGTACTGCCACAACCACAATAAA AGGCAATAGGAGCAACGCAA
Downstream 100 bases:
>100_bases ATTGTTCTACACCGGCCAAGTCGTGGTTGACTTGGTGATGGCCATCGACCGCCTGCCGCCGTCGGGCGGAGACGTGTTGG CTACCAGCGCTACGTTCGAG
Product: permease for cytosine/purines, uracil, thiamine, allantoin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MTTSSPSQGAGQLETRGIEPVPENECNGHPLQLFWVWFAANISILGLPLGATLVAFQGLAIWQAIIVAILGAAGSFAVVG VISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLFAILFGTPVKAKNSPGLTLVFIALF VLLTLTVSGLGHATLLVIQKWATYLFGALNLVVGGFLLTHIDWSLVFDAPAAPLSAMIIGVGTMAAGTGIGWANAGADMS RYQHASVKATRLVASAALGAGIPLVLLITLGGLLSVGNDHLASATDPIIAIREMLPTWMAVPYLITAFGGLLLSNNLSVY SAGLTTLTLGLKVKRVHAVIVDIIAIFAGSIYFMLIADSFYGPFITFISMLAVPITAWVGIFVVDLLHRHIYSPKDLLDQ TPRSAYWYRGGVEWRALGSWALAIVLGFSFTTVATTPEHVLFKGFLADSWLGHNGLGWIVTFIVAGGLYALLGGARDRRV VTEEAAHAR
Sequences:
>Translated_489_residues MTTSSPSQGAGQLETRGIEPVPENECNGHPLQLFWVWFAANISILGLPLGATLVAFQGLAIWQAIIVAILGAAGSFAVVG VISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLFAILFGTPVKAKNSPGLTLVFIALF VLLTLTVSGLGHATLLVIQKWATYLFGALNLVVGGFLLTHIDWSLVFDAPAAPLSAMIIGVGTMAAGTGIGWANAGADMS RYQHASVKATRLVASAALGAGIPLVLLITLGGLLSVGNDHLASATDPIIAIREMLPTWMAVPYLITAFGGLLLSNNLSVY SAGLTTLTLGLKVKRVHAVIVDIIAIFAGSIYFMLIADSFYGPFITFISMLAVPITAWVGIFVVDLLHRHIYSPKDLLDQ TPRSAYWYRGGVEWRALGSWALAIVLGFSFTTVATTPEHVLFKGFLADSWLGHNGLGWIVTFIVAGGLYALLGGARDRRV VTEEAAHAR >Mature_488_residues TTSSPSQGAGQLETRGIEPVPENECNGHPLQLFWVWFAANISILGLPLGATLVAFQGLAIWQAIIVAILGAAGSFAVVGV ISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLFAILFGTPVKAKNSPGLTLVFIALFV LLTLTVSGLGHATLLVIQKWATYLFGALNLVVGGFLLTHIDWSLVFDAPAAPLSAMIIGVGTMAAGTGIGWANAGADMSR YQHASVKATRLVASAALGAGIPLVLLITLGGLLSVGNDHLASATDPIIAIREMLPTWMAVPYLITAFGGLLLSNNLSVYS AGLTTLTLGLKVKRVHAVIVDIIAIFAGSIYFMLIADSFYGPFITFISMLAVPITAWVGIFVVDLLHRHIYSPKDLLDQT PRSAYWYRGGVEWRALGSWALAIVLGFSFTTVATTPEHVLFKGFLADSWLGHNGLGWIVTFIVAGGLYALLGGARDRRVV TEEAAHAR
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 51701; Mature: 51570
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSPSQGAGQLETRGIEPVPENECNGHPLQLFWVWFAANISILGLPLGATLVAFQGLA CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHEEHHCCCEEEEECHHHHHHHHHHHH IWQAIIVAILGAAGSFAVVGVISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGW HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCC ETVNTTTAAFVLLSLFAILFGTPVKAKNSPGLTLVFIALFVLLTLTVSGLGHATLLVIQK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WATYLFGALNLVVGGFLLTHIDWSLVFDAPAAPLSAMIIGVGTMAAGTGIGWANAGADMS HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH RYQHASVKATRLVASAALGAGIPLVLLITLGGLLSVGNDHLASATDPIIAIREMLPTWMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH VPYLITAFGGLLLSNNLSVYSAGLTTLTLGLKVKRVHAVIVDIIAIFAGSIYFMLIADSF HHHHHHHHHHHHHCCCCCEEECCHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGPFITFISMLAVPITAWVGIFVVDLLHRHIYSPKDLLDQTPRSAYWYRGGVEWRALGSW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCEEHHHHH ALAIVLGFSFTTVATTPEHVLFKGFLADSWLGHNGLGWIVTFIVAGGLYALLGGARDRRV HHHHHHHCCHHEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC VTEEAAHAR HHHHHCCCC >Mature Secondary Structure TTSSPSQGAGQLETRGIEPVPENECNGHPLQLFWVWFAANISILGLPLGATLVAFQGLA CCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHEEHHCCCEEEEECHHHHHHHHHHHH IWQAIIVAILGAAGSFAVVGVISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGW HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCC ETVNTTTAAFVLLSLFAILFGTPVKAKNSPGLTLVFIALFVLLTLTVSGLGHATLLVIQK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WATYLFGALNLVVGGFLLTHIDWSLVFDAPAAPLSAMIIGVGTMAAGTGIGWANAGADMS HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH RYQHASVKATRLVASAALGAGIPLVLLITLGGLLSVGNDHLASATDPIIAIREMLPTWMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH VPYLITAFGGLLLSNNLSVYSAGLTTLTLGLKVKRVHAVIVDIIAIFAGSIYFMLIADSF HHHHHHHHHHHHHCCCCCEEECCHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGPFITFISMLAVPITAWVGIFVVDLLHRHIYSPKDLLDQTPRSAYWYRGGVEWRALGSW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCEEHHHHH ALAIVLGFSFTTVATTPEHVLFKGFLADSWLGHNGLGWIVTFIVAGGLYALLGGARDRRV HHHHHHHCCHHEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC VTEEAAHAR HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]