Click here to switch to the map view.

The map label for this gene is yoaA [C]

Identifier: 66046140

GI number: 66046140

Start: 3489280

End: 3491607

Strand: Reverse

Name: yoaA [C]

Synonym: Psyr_2909

Alternate gene names: 66046140

Gene position: 3491607-3489280 (Counterclockwise)

Preceding gene: 66046141

Following gene: 66046139

Centisome position: 57.3

GC content: 62.11

Gene sequence:

>2328_bases
GTGACCCCGAACGCCCCCGTAAACCCTGATCCCGAGCCTGTCCTCGCCAGCGACCTGCCTGCACGTTATGTCGTGGCCGT
GCGCGCGTTGTGCGAGTTTACCGCCAAGGTGGGCGACCTCGACCTGCGCTTCACGCCGTCACCCACGGCTCAGGAAGGCA
TTGCCGGGCACCGCACGGTCGCCGCGCGGCGCGGTGCCGATTACCAGGCCGAGCTGTCGTTGAGTGGTGATTATCGCGAG
CTGACGGTAAGGGGCAGGGCGGACGGCTATGACGCCAGTCGCAATCAACTGGAAGAGGTGAAAACCTATCGCGGTGAACT
CGACGCGATGCCCGCCAACCACCGTCAGTTGCACTGGGCGCAGGTGAAGGTCTACGGCTGGCTGCTTTGCCAGCGCCTGC
AGCTTGAGGAAGTGACGCTGGCCTTGGTGTATTTCAACATTGTCAGCGAGCAGGAAACCCTGATTCGCGAGCCGTTCAGT
GCGCCCACGTTGCAAGCGTTCTTCGAACGACAGTGCACGATATTCCTCGGCTGGGCGCAGCAGGAGCTGGCGCATACGCA
GGCGCTGCACACGACGCTGGGCAGCCTGAAATTCCCTCACGCGTCCTTCCGTACCGGGCAGCGGGTGCTGGCCGAGTCGG
TGTACAAGGCCGTCAGTACCGGCTGTTGCCTGATGGCTCAGGCCCCGACCGGTATCGGCAAAACGGTGGGCACGCTGTTT
CCCTTGCTCAAGGCCGCACCCGGCCAGAAGCTCGACAAGATTTTCTTTCTCACCGCCAAGACACCAGGGCGTCGCCTGGC
ACTGGATGCACTGAAAGTCATCAATCACAGTGCGCCGGAGCTGAAGCTGCGGGTCCTTGAGCTGGTGGCGCGTGACAAGG
CCTGCGAGCATCCGGACAAGGCCTGTAATGGTGATTCCTGTCCGCTGGCCAGCGGCTTTTATGATCGTCTGCCAGCCGCT
CGCTCGGCGGCGTTGACGTCGCCGTGGCTGAATCAGGCGGGCGTACGCGATGTCGCCTTGCAGCATCAGGTTTGCCCGTA
TTATTTGAGCCAGGAACTGGCGCGCTGGGCTGACGTGGTCATCGCGGACTACAACTATTACTTTGACCTGAGCGCGCTGT
TGTTCGGCCTCGGTCAGCTCAATCAGTGGCGCGTTGCGGTGCTGGTCGATGAAGCCCACAACATGGTCGAGCGGGCACGC
CAGATGTACAGCGCGAGCCTTGACCAGAGCCAGCTGAAAGCCTTGATCCAGACAGCGCCGGAACCGGTGAAAAAAGCCTT
GCAGCGCCTGGATCGCCAATGGAATGCGCTGCACAAGGCACAGCCCGGTACCTATCAGGCTTATTCGGCAGCACCGGAAA
AATTCATCGGCAGCCTCAACCAGAGCATCTCGACCATCGGTGATCATTTCAACGAGCACCCGCAGGCCGTGGATGGCACG
TTGCAGGGGTTCTACCTGGACGCCATCGGCTTTGCGCGCATCGCCGAGCTGTTCGATGAGCATTTCATTTTCGACATCAC
CCGGCGCGAGGCGGGCGGCAAGCGCGTTCTGTCGCGCCTCAGCCTGCGCAACGTCGTCCCTGCGCGTTTCATCCGCCCGC
GCCTGACCGCTGCGCGCAGCACGGTACTGTTTTCCGCAACGCTCAACCCGCGCCACTATTACGCGGACCTGCTGGGATTG
CCGGCCAATACCGCATGGATCGATGTGGAATCGCCGTTTCACCACGATCAGCTCGATGTGCGCATCGTCAGTCGCATTTC
CACTCGCTTCACTCATCGTCAGGCTTCGCTGGCGCCGATTGTCGAACTGATGGCCAAGCAGTTCGATGCTCGGCCGGGCA
ATTACCTGGCGTTCTTCAGCAGTTTCGATTACCTGCAGCAGGTCGCCGAGCTGATGGCGCGCACCCACCCGCACATCAGC
CTCTGGCTGCAGGCACGGGGGATGGGCGAGAGTGAGCGCCACGCGTTTCTCGACCGGTTCACCCTGAGCAGTCAGGGCAT
CGGTTTTGCCGTGCTGGGCGGCGCGTTTGGTGAAGGTATCGACTTGCCGGGCGCACGCCTGATCGGCGCGTTCATCGCCA
CCCTGGGGCTGCCTCAGCTCAATCCGGTCAACGAACAGTTCAAGCAGCGCATGGCGGCGCTGTTCGGTGCCGGTTACGAC
TACACCTACCTTTACCCCGGCGTGCAGAAGGTGGTGCAGGCTGCGGGGCGGGTTATCCGCAGCCAGAGTGACAGTGGTGT
GGTGATGCTCATCGATGACCGTTTTGCCGAGCACAAGGTGAAGCAGTTGTTTCCAGCGTGGTGGCGGCCCGAAACGTCGA
TGGCCTGA

Upstream 100 bases:

>100_bases
GACATGGCAGGCCGTCGATCCATTTGTGTTTGCCAGACATGGTGCAAGGTTGTTAACTGGACGCCTGTCCAGTATTCACA
ACCAACGGCTCCCCAGCGCA

Downstream 100 bases:

>100_bases
GCTCGGTTGCCGTTTTGGCGATTGAGCTGAAACAGAAGCAGATGCCGGGGATCAATACTCAAGCGGCGCTGTCGAACTGC
CAGTAAACTGCGGCATCGAT

Product: DEAD_2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 774

Protein sequence:

>775_residues
MTPNAPVNPDPEPVLASDLPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTVAARRGADYQAELSLSGDYRE
LTVRGRADGYDASRNQLEEVKTYRGELDAMPANHRQLHWAQVKVYGWLLCQRLQLEEVTLALVYFNIVSEQETLIREPFS
APTLQAFFERQCTIFLGWAQQELAHTQALHTTLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
PLLKAAPGQKLDKIFFLTAKTPGRRLALDALKVINHSAPELKLRVLELVARDKACEHPDKACNGDSCPLASGFYDRLPAA
RSAALTSPWLNQAGVRDVALQHQVCPYYLSQELARWADVVIADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERAR
QMYSASLDQSQLKALIQTAPEPVKKALQRLDRQWNALHKAQPGTYQAYSAAPEKFIGSLNQSISTIGDHFNEHPQAVDGT
LQGFYLDAIGFARIAELFDEHFIFDITRREAGGKRVLSRLSLRNVVPARFIRPRLTAARSTVLFSATLNPRHYYADLLGL
PANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPIVELMAKQFDARPGNYLAFFSSFDYLQQVAELMARTHPHIS
LWLQARGMGESERHAFLDRFTLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAEHKVKQLFPAWWRPETSMA

Sequences:

>Translated_775_residues
MTPNAPVNPDPEPVLASDLPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTVAARRGADYQAELSLSGDYRE
LTVRGRADGYDASRNQLEEVKTYRGELDAMPANHRQLHWAQVKVYGWLLCQRLQLEEVTLALVYFNIVSEQETLIREPFS
APTLQAFFERQCTIFLGWAQQELAHTQALHTTLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
PLLKAAPGQKLDKIFFLTAKTPGRRLALDALKVINHSAPELKLRVLELVARDKACEHPDKACNGDSCPLASGFYDRLPAA
RSAALTSPWLNQAGVRDVALQHQVCPYYLSQELARWADVVIADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERAR
QMYSASLDQSQLKALIQTAPEPVKKALQRLDRQWNALHKAQPGTYQAYSAAPEKFIGSLNQSISTIGDHFNEHPQAVDGT
LQGFYLDAIGFARIAELFDEHFIFDITRREAGGKRVLSRLSLRNVVPARFIRPRLTAARSTVLFSATLNPRHYYADLLGL
PANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPIVELMAKQFDARPGNYLAFFSSFDYLQQVAELMARTHPHIS
LWLQARGMGESERHAFLDRFTLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAEHKVKQLFPAWWRPETSMA
>Mature_774_residues
TPNAPVNPDPEPVLASDLPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTVAARRGADYQAELSLSGDYREL
TVRGRADGYDASRNQLEEVKTYRGELDAMPANHRQLHWAQVKVYGWLLCQRLQLEEVTLALVYFNIVSEQETLIREPFSA
PTLQAFFERQCTIFLGWAQQELAHTQALHTTLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLFP
LLKAAPGQKLDKIFFLTAKTPGRRLALDALKVINHSAPELKLRVLELVARDKACEHPDKACNGDSCPLASGFYDRLPAAR
SAALTSPWLNQAGVRDVALQHQVCPYYLSQELARWADVVIADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERARQ
MYSASLDQSQLKALIQTAPEPVKKALQRLDRQWNALHKAQPGTYQAYSAAPEKFIGSLNQSISTIGDHFNEHPQAVDGTL
QGFYLDAIGFARIAELFDEHFIFDITRREAGGKRVLSRLSLRNVVPARFIRPRLTAARSTVLFSATLNPRHYYADLLGLP
ANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPIVELMAKQFDARPGNYLAFFSSFDYLQQVAELMARTHPHISL
WLQARGMGESERHAFLDRFTLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYDY
TYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAEHKVKQLFPAWWRPETSMA

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Drosophila melanogaster, GI18543219, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 86314; Mature: 86182

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPNAPVNPDPEPVLASDLPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCHHH
AARRGADYQAELSLSGDYRELTVRGRADGYDASRNQLEEVKTYRGELDAMPANHRQLHWA
HHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHH
QVKVYGWLLCQRLQLEEVTLALVYFNIVSEQETLIREPFSAPTLQAFFERQCTIFLGWAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECHH
QELAHTQALHTTLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
PLLKAAPGQKLDKIFFLTAKTPGRRLALDALKVINHSAPELKLRVLELVARDKACEHPDK
HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
ACNGDSCPLASGFYDRLPAARSAALTSPWLNQAGVRDVALQHQVCPYYLSQELARWADVV
CCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHEE
IADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKALIQTAP
EECCCCEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
EPVKKALQRLDRQWNALHKAQPGTYQAYSAAPEKFIGSLNQSISTIGDHFNEHPQAVDGT
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCC
LQGFYLDAIGFARIAELFDEHFIFDITRREAGGKRVLSRLSLRNVVPARFIRPRLTAARS
HHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
TVLFSATLNPRHYYADLLGLPANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPI
EEEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VELMAKQFDARPGNYLAFFSSFDYLQQVAELMARTHPHISLWLQARGMGESERHAFLDRF
HHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
YTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAEHKVKQLFPAWWRPETSMA
CEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure 
TPNAPVNPDPEPVLASDLPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCHHH
AARRGADYQAELSLSGDYRELTVRGRADGYDASRNQLEEVKTYRGELDAMPANHRQLHWA
HHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEHH
QVKVYGWLLCQRLQLEEVTLALVYFNIVSEQETLIREPFSAPTLQAFFERQCTIFLGWAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECHH
QELAHTQALHTTLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
PLLKAAPGQKLDKIFFLTAKTPGRRLALDALKVINHSAPELKLRVLELVARDKACEHPDK
HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
ACNGDSCPLASGFYDRLPAARSAALTSPWLNQAGVRDVALQHQVCPYYLSQELARWADVV
CCCCCCCCCCCCHHHHCCCHHHHHHCCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHEE
IADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKALIQTAP
EECCCCEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
EPVKKALQRLDRQWNALHKAQPGTYQAYSAAPEKFIGSLNQSISTIGDHFNEHPQAVDGT
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCC
LQGFYLDAIGFARIAELFDEHFIFDITRREAGGKRVLSRLSLRNVVPARFIRPRLTAARS
HHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
TVLFSATLNPRHYYADLLGLPANTAWIDVESPFHHDQLDVRIVSRISTRFTHRQASLAPI
EEEEEEECCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VELMAKQFDARPGNYLAFFSSFDYLQQVAELMARTHPHISLWLQARGMGESERHAFLDRF
HHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
YTYLYPGVQKVVQAAGRVIRSQSDSGVVMLIDDRFAEHKVKQLFPAWWRPETSMA
CEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11029001 [H]