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The map label for this gene is yjiR [H]

Identifier: 66046141

GI number: 66046141

Start: 3491713

End: 3493119

Strand: Reverse

Name: yjiR [H]

Synonym: Psyr_2910

Alternate gene names: 66046141

Gene position: 3493119-3491713 (Counterclockwise)

Preceding gene: 66046142

Following gene: 66046140

Centisome position: 57.32

GC content: 62.76

Gene sequence:

>1407_bases
ATGAAAAACAACACGGATTTCGCCTATCAGGCGGTCTACCGCTACCTGGTGCGTCTGGTTGACCAGCAGCAGGGCGAGCC
GGCGCTGAAAATGCCGTCACTGCGACAGCTGGCGCAGCGCCTGAACGTATCGATATCGACGGTGCAAAGCGCCTATTCAT
TGCTGGAAAAGGAAGGGCGCGTCTATTCGCTGCCCAAATCGGGTTATTACTCGGTACCGCGCAGCTTGAATGCGCACGGT
CACGTAGTGCCTGACGCAGACGGCGATCTTTTGCAGGCCCTGTACGCCAACGCCCGGCGTCCCGGCATGGCGTTGCTGGG
TTGCGATGAGCCGGCGCTTTTGCTCGCCCAGGACAGTCCGCTGCCGGCGATGGAGCGCGAGCTGGGCAGGCATTACCCGC
ACCCGCGGGACCCGGTTTTTCAGCCATTCGGCGAGCCGGAACTTCGCACGGCGCTGGCCGCCCGGTACACCCGCGATGCA
GCGCATTGCTGGCACGCTGACAATGTCTATGTTGCCGCTGACTTTCATGGCGCATTCAAGGCGGTGCTTGGCACGCTGCG
GCTGCGCGGTGGCACGGTACTGGTGGAATCGCCCTGTGCCTGGGCGTTGCTGCGCCTGCTGCAATCGTTCGACATCCGGG
TTATCGAGCTGCCGCTGGATGAGACCGGCAGCCTTGATGCGGCCCGGCTTGACGGCGTATTGCGCGGCCATGACATCGGC
CTTGTCGTGTTGCCCGCGTTGCTGAACCCGGTGCGAGGCAGTGTGCGTCCGCAAGACAACAGCCAGGCTGTCGCCGAAGT
GCTCAATCGTCATCAGGTCTGGGTGTTGGAAAACGACAGTCACGCCGGGCTGCAATTTGCTGCCGGGCAGGCCCCCTTGC
GCGACTGGATCGACCCGCAGCGGCTGGTGATCATCGGCGGATTCGAGAAGAGCCTCGGGCCTGAAGCGCCCTATGCTTAC
CTGCTGTGCAAAAGCCTGGATGCGCATTGGCAGCAGTATTTCTGCCTGCGAGCATTCGAACTGCCGCCGCTTCGGCAAAG
GGCCATCGCCAGGTTATGCAGCAGCGGGCGTCTGGACAGGCATCTGCTGGCGTTGCGAGAGACGCTGAGCAGACGCATGC
AGGCGATGACGCAGCAACTGGATGAACAGACCGGCGGGACACTGCGCTATCAGCTGCCCGAGGGCGGCTGCGGCGTGTGG
GCCGAGAGTGCGTACCGGGTGGACATGCGTCAGGTCTTCGTTACGTTGCTGGCCCAGTCGATCGTCGTCAGTCCTGGCGA
GCTGTTCACTTTGCAGAACCGCTACTCGCAACATCTGTGGGTCAGCTATGCGACTGACTGGACCCGTGAACCTGCCAGGC
TGCTGGGCGCGCTGGCAGAGGCATTAAGTCACGCTCGTCTGCCATAG

Upstream 100 bases:

>100_bases
GGACGCTGATCCGGTCGCCAAACATGACTGCTGTCGGTAAACGGCGTTGGTCATGCAGCGATGTTCTGAAGCCTGTTCTG
GTTGAGCGGCGGGTACCTGC

Downstream 100 bases:

>100_bases
GCGTCGACATGGCAGGCCGTCGATCCATTTGTGTTTGCCAGACATGGTGCAAGGTTGTTAACTGGACGCCTGTCCAGTAT
TCACAACCAACGGCTCCCCA

Product: regulatory protein, GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MKNNTDFAYQAVYRYLVRLVDQQQGEPALKMPSLRQLAQRLNVSISTVQSAYSLLEKEGRVYSLPKSGYYSVPRSLNAHG
HVVPDADGDLLQALYANARRPGMALLGCDEPALLLAQDSPLPAMERELGRHYPHPRDPVFQPFGEPELRTALAARYTRDA
AHCWHADNVYVAADFHGAFKAVLGTLRLRGGTVLVESPCAWALLRLLQSFDIRVIELPLDETGSLDAARLDGVLRGHDIG
LVVLPALLNPVRGSVRPQDNSQAVAEVLNRHQVWVLENDSHAGLQFAAGQAPLRDWIDPQRLVIIGGFEKSLGPEAPYAY
LLCKSLDAHWQQYFCLRAFELPPLRQRAIARLCSSGRLDRHLLALRETLSRRMQAMTQQLDEQTGGTLRYQLPEGGCGVW
AESAYRVDMRQVFVTLLAQSIVVSPGELFTLQNRYSQHLWVSYATDWTREPARLLGALAEALSHARLP

Sequences:

>Translated_468_residues
MKNNTDFAYQAVYRYLVRLVDQQQGEPALKMPSLRQLAQRLNVSISTVQSAYSLLEKEGRVYSLPKSGYYSVPRSLNAHG
HVVPDADGDLLQALYANARRPGMALLGCDEPALLLAQDSPLPAMERELGRHYPHPRDPVFQPFGEPELRTALAARYTRDA
AHCWHADNVYVAADFHGAFKAVLGTLRLRGGTVLVESPCAWALLRLLQSFDIRVIELPLDETGSLDAARLDGVLRGHDIG
LVVLPALLNPVRGSVRPQDNSQAVAEVLNRHQVWVLENDSHAGLQFAAGQAPLRDWIDPQRLVIIGGFEKSLGPEAPYAY
LLCKSLDAHWQQYFCLRAFELPPLRQRAIARLCSSGRLDRHLLALRETLSRRMQAMTQQLDEQTGGTLRYQLPEGGCGVW
AESAYRVDMRQVFVTLLAQSIVVSPGELFTLQNRYSQHLWVSYATDWTREPARLLGALAEALSHARLP
>Mature_468_residues
MKNNTDFAYQAVYRYLVRLVDQQQGEPALKMPSLRQLAQRLNVSISTVQSAYSLLEKEGRVYSLPKSGYYSVPRSLNAHG
HVVPDADGDLLQALYANARRPGMALLGCDEPALLLAQDSPLPAMERELGRHYPHPRDPVFQPFGEPELRTALAARYTRDA
AHCWHADNVYVAADFHGAFKAVLGTLRLRGGTVLVESPCAWALLRLLQSFDIRVIELPLDETGSLDAARLDGVLRGHDIG
LVVLPALLNPVRGSVRPQDNSQAVAEVLNRHQVWVLENDSHAGLQFAAGQAPLRDWIDPQRLVIIGGFEKSLGPEAPYAY
LLCKSLDAHWQQYFCLRAFELPPLRQRAIARLCSSGRLDRHLLALRETLSRRMQAMTQQLDEQTGGTLRYQLPEGGCGVW
AESAYRVDMRQVFVTLLAQSIVVSPGELFTLQNRYSQHLWVSYATDWTREPARLLGALAEALSHARLP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=474, Percent_Identity=25.3164556962025, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787710, Length=438, Percent_Identity=24.6575342465753, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52250; Mature: 52250

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNTDFAYQAVYRYLVRLVDQQQGEPALKMPSLRQLAQRLNVSISTVQSAYSLLEKEGR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC
VYSLPKSGYYSVPRSLNAHGHVVPDADGDLLQALYANARRPGMALLGCDEPALLLAQDSP
EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCC
LPAMERELGRHYPHPRDPVFQPFGEPELRTALAARYTRDAAHCWHADNVYVAADFHGAFK
CCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
AVLGTLRLRGGTVLVESPCAWALLRLLQSFDIRVIELPLDETGSLDAARLDGVLRGHDIG
HHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCHHCCCCCH
LVVLPALLNPVRGSVRPQDNSQAVAEVLNRHQVWVLENDSHAGLQFAAGQAPLRDWIDPQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHCCCCC
RLVIIGGFEKSLGPEAPYAYLLCKSLDAHWQQYFCLRAFELPPLRQRAIARLCSSGRLDR
EEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
HLLALRETLSRRMQAMTQQLDEQTGGTLRYQLPEGGCGVWAESAYRVDMRQVFVTLLAQS
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IVVSPGELFTLQNRYSQHLWVSYATDWTREPARLLGALAEALSHARLP
HHCCCCCEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNNTDFAYQAVYRYLVRLVDQQQGEPALKMPSLRQLAQRLNVSISTVQSAYSLLEKEGR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCC
VYSLPKSGYYSVPRSLNAHGHVVPDADGDLLQALYANARRPGMALLGCDEPALLLAQDSP
EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCC
LPAMERELGRHYPHPRDPVFQPFGEPELRTALAARYTRDAAHCWHADNVYVAADFHGAFK
CCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
AVLGTLRLRGGTVLVESPCAWALLRLLQSFDIRVIELPLDETGSLDAARLDGVLRGHDIG
HHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCHHCCCCCH
LVVLPALLNPVRGSVRPQDNSQAVAEVLNRHQVWVLENDSHAGLQFAAGQAPLRDWIDPQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHCCCCC
RLVIIGGFEKSLGPEAPYAYLLCKSLDAHWQQYFCLRAFELPPLRQRAIARLCSSGRLDR
EEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
HLLALRETLSRRMQAMTQQLDEQTGGTLRYQLPEGGCGVWAESAYRVDMRQVFVTLLAQS
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
IVVSPGELFTLQNRYSQHLWVSYATDWTREPARLLGALAEALSHARLP
HHCCCCCEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]