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The map label for this gene is xylR [H]

Identifier: 66046113

GI number: 66046113

Start: 3457488

End: 3458687

Strand: Reverse

Name: xylR [H]

Synonym: Psyr_2882

Alternate gene names: 66046113

Gene position: 3458687-3457488 (Counterclockwise)

Preceding gene: 66046118

Following gene: 66046109

Centisome position: 56.76

GC content: 62.08

Gene sequence:

>1200_bases
ATGAAAACCGTACCTCCCGTTCACCGTATCGCGCTGTTGTTCAACGGCAGCAAGATTTATGACCGCGGCATCATCAGCGG
TATCGGCAACTACCTCAGCAGCACCCGGGTGTCCTGGGACCTGTTCCTGGAGGAGGATTTCCTCTGTCGCCTGAAAGGCA
TCGAGCGCTGGCAGGGCGACGGGATCATTGCCGATTTCGATGACCCGCTGATCGGCGAGGCACTGGCCGGGATCAAACTG
CCGGTGGTAGCGGTGGGTGGGTCCTATCAGGACGAGCGCGCCTACCCGAAGGGCATTCCTTATGTTGCGACTGACAATCA
CGCCTTGATCAAGGCGGCTTACGAGCACCTGATCGAGGCCGGGCTGACGCGCTTTGCCTGCTTCAGCCTGCCTGAAGCGC
AAGCCAATCGCTGGGCTCAGGAGCGCGAGCAGGCCTTTCGCCGCCTGCTGCAGCGCGACGGCCTGCACGCCGAGATCTAT
CGTGGCCTGGGCACCAGCGCGCCGCTCTGGGACAGCGCGGTAGAACAGCAGATCGCCTGGCTGCAAAGCCTGCCCAAGCC
GATCGGCATCATCGCAGTGACCGACGCCCGCGCTCGTCAGCTATTGCAGGCCTGCCTGACCGCCGGAATTGCCGTCCCCG
AACAGGTGGCGCTGATCGGCATCGACAATGATCCGTTGACCAGGACCCTCACTCGCGTGCCACTGAGTTCGGTCGTTCAG
GGCACCGACACCATGGGCCGCACCGCCGCACGTCTGCTGCACCAGATGCTGCACGGCATGCCGTCCTCGGGTACCCACAT
TCTGATACCGCCGGATACTGTCAACGTGCAGGCTTCGAGTCTGCATCAGCCTTTGGGTGACCCCTATGTCATGCAAGCGC
TGCTGTTTATCCGGCAGTACGCGTGCCAAGGCATCAAGACTGCACAGGTCGCCGCCTACGTGGGCGTTTCGCGCTCGTCA
CTGGAGTCACACTTTCGCCGCGTAAGGGGCTGTAGCGTGCATGACGAGATCCTGCGTTTCAAACTGGCCGCCGCTGCAAA
CGGACTGGAAAACACCGGGCTGGCCATTGCCGAAATCGCCCGTGATTGTGGTTTTCGGTCTGCGCAATACCTGCACACCG
TGTTTCGTCGCGAGTTCGGCTGCACGCCGCGAGAGTACCAGCAGGGTGCCAATGCGGCCGTGCAATGCTCAAGTGCCTGA

Upstream 100 bases:

>100_bases
AATCGTCAACGCACAGTGCGATTTTGAGTGTTGAGATTCGCCGGTCAGCGGCCTAGTCTGTGGCCAACGGCGTCGTGCTT
ATCGAATCGGCATAAAAACA

Downstream 100 bases:

>100_bases
CAAGGTCAGGCAGCCACGACCCTTATCGTCCAGAAGTCGGTGGACAGATTTTCATCCAGCAGATAACTGTAGGGCAGGGT
GAAGTAGCCTTCCATGCCCC

Product: helix-turn-helix, AraC type:periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALAGIKL
PVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEAGLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIY
RGLGTSAPLWDSAVEQQIAWLQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ
GTDTMGRTAARLLHQMLHGMPSSGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAEIARDCGFRSAQYLHTVFRREFGCTPREYQQGANAAVQCSSA

Sequences:

>Translated_399_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALAGIKL
PVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEAGLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIY
RGLGTSAPLWDSAVEQQIAWLQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ
GTDTMGRTAARLLHQMLHGMPSSGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAEIARDCGFRSAQYLHTVFRREFGCTPREYQQGANAAVQCSSA
>Mature_399_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALAGIKL
PVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEAGLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIY
RGLGTSAPLWDSAVEQQIAWLQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ
GTDTMGRTAARLLHQMLHGMPSSGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAEIARDCGFRSAQYLHTVFRREFGCTPREYQQGANAAVQCSSA

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=380, Percent_Identity=47.6315789473684, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 43715; Mature: 43715

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGD
CCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC
GIIADFDDPLIGEALAGIKLPVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEA
CEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH
GLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIYRGLGTSAPLWDSAVEQQIAW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHH
LQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ
HHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHH
GTDTMGRTAARLLHQMLHGMPSSGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIRQY
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
ACQGIKTAQVAAYVGVSRSSLESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAEIA
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RDCGFRSAQYLHTVFRREFGCTPREYQQGANAAVQCSSA
HHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCC
>Mature Secondary Structure
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGD
CCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC
GIIADFDDPLIGEALAGIKLPVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEA
CEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH
GLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIYRGLGTSAPLWDSAVEQQIAW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHH
LQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ
HHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHH
GTDTMGRTAARLLHQMLHGMPSSGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIRQY
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
ACQGIKTAQVAAYVGVSRSSLESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAEIA
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
RDCGFRSAQYLHTVFRREFGCTPREYQQGANAAVQCSSA
HHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]