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The map label for this gene is rbsC [H]

Identifier: 66046106

GI number: 66046106

Start: 3449331

End: 3450335

Strand: Reverse

Name: rbsC [H]

Synonym: Psyr_2875

Alternate gene names: 66046106

Gene position: 3450335-3449331 (Counterclockwise)

Preceding gene: 66046107

Following gene: 66046105

Centisome position: 56.62

GC content: 61.49

Gene sequence:

>1005_bases
ATGTCCGCGCTTGATCTATCCGTTGCGCAGGCTGACGATCCAGCGCAACGCTGGCTCGTGCAACTGGCGCAGCGCGGTTC
GTTGCTGGTGTTTCTGGCGATTCTGCTCGGCTTTGCCGTCAGTGCGCCGAACTTTCTCAGCCTTGGCAACATCAGCAATG
TGTTCGCCCAGTCAGCAACGCTCGGCATACTCGCGCTGGGCCTGACCTGTGTGGTCATCGGTGGTGGTTCCAATGTGGTC
AGTGGCGGCCTGGACCTGTCGCTGGCGGCCAATCTCGGTCTGTGTGCGGCCGTTTACAGCAGCCTGAACAACGCCGGGTT
CGATGCCTGGCAAGCGATTGGCCTGACGCTCGGCTGCGGCCTGCTGGTCGGCGCGTTCAACGGTCTGGCGGTGGTGTTTT
TACGTTTGCCGCCGTTACTGGCGACGCTGGCGAGCATGAACCTGATTGCCGGTCTGGAGCTGGTGCTGACCCAGAACACT
GTGCTGGCGACCGACTCGGCATTGCTGGACAGCCTTGCGTCCGGCGTCTGGCTGGGTGTTCCGGCGTTAGCCTGGGTGCT
GCTGGGTGTCGCGACGGTGTTGTGGCTGTTGATTCAGCACAGCGCGTTCGGCCTGCGTCTTTACGCCATTGGCGAATACC
CGCAAGCAGCCGAGGCTGCCGGGTTGAATCTGCGGCGCTATGTGTTTGCCAGTTACCTGATTGCCGGTGGCTGCGCTGCG
CTGGCTGCATTCTGCTCCGCAGCGTTTTTCAGCGGCAGCACGACCGGTTCCGGTGACATGCTGCTGTCAGTGGTGGCTAT
CGCCTTTCTCGGCGTGGTGTTCTCGCGGCGTCTGACTGCCAATATTCCCGGCACCCTGTTGGCGACGCTGCTGCTGGGCT
TTCTGATCAACGGCTTTCAATTGCTGAACATTTCCAGCTTCTGGGTCAACGGCGTGCAAGGCGTGTTGATTCTGCTGGTG
GTGGCATTTTCCGGGGCATTCGGCCGCCGGGAGGGTGAACAATGA

Upstream 100 bases:

>100_bases
TTCGACTCATTGAGCACCGACAGCGACCAGTTGCTGGCCTGCGCCACGGGCGCCACTGAAAGCGACCATGACAGCCAATC
ATTCCCTCCGGAGGCCCATT

Downstream 100 bases:

>100_bases
ATACGCTGACCCTGACGACCTCTTCGACGCTGATCAAGGTGCTGCCGCGCCTGTTGCCAGCGGTCCTGCCGCTGTTGGTG
CTGATCATCCTGCTGTTTTT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSALDLSVAQADDPAQRWLVQLAQRGSLLVFLAILLGFAVSAPNFLSLGNISNVFAQSATLGILALGLTCVVIGGGSNVV
SGGLDLSLAANLGLCAAVYSSLNNAGFDAWQAIGLTLGCGLLVGAFNGLAVVFLRLPPLLATLASMNLIAGLELVLTQNT
VLATDSALLDSLASGVWLGVPALAWVLLGVATVLWLLIQHSAFGLRLYAIGEYPQAAEAAGLNLRRYVFASYLIAGGCAA
LAAFCSAAFFSGSTTGSGDMLLSVVAIAFLGVVFSRRLTANIPGTLLATLLLGFLINGFQLLNISSFWVNGVQGVLILLV
VAFSGAFGRREGEQ

Sequences:

>Translated_334_residues
MSALDLSVAQADDPAQRWLVQLAQRGSLLVFLAILLGFAVSAPNFLSLGNISNVFAQSATLGILALGLTCVVIGGGSNVV
SGGLDLSLAANLGLCAAVYSSLNNAGFDAWQAIGLTLGCGLLVGAFNGLAVVFLRLPPLLATLASMNLIAGLELVLTQNT
VLATDSALLDSLASGVWLGVPALAWVLLGVATVLWLLIQHSAFGLRLYAIGEYPQAAEAAGLNLRRYVFASYLIAGGCAA
LAAFCSAAFFSGSTTGSGDMLLSVVAIAFLGVVFSRRLTANIPGTLLATLLLGFLINGFQLLNISSFWVNGVQGVLILLV
VAFSGAFGRREGEQ
>Mature_333_residues
SALDLSVAQADDPAQRWLVQLAQRGSLLVFLAILLGFAVSAPNFLSLGNISNVFAQSATLGILALGLTCVVIGGGSNVVS
GGLDLSLAANLGLCAAVYSSLNNAGFDAWQAIGLTLGCGLLVGAFNGLAVVFLRLPPLLATLASMNLIAGLELVLTQNTV
LATDSALLDSLASGVWLGVPALAWVLLGVATVLWLLIQHSAFGLRLYAIGEYPQAAEAAGLNLRRYVFASYLIAGGCAAL
AAFCSAAFFSGSTTGSGDMLLSVVAIAFLGVVFSRRLTANIPGTLLATLLLGFLINGFQLLNISSFWVNGVQGVLILLVV
AFSGAFGRREGEQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=31.0897435897436, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=30.5263157894737, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=27.3927392739274, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI145693214, Length=219, Percent_Identity=29.6803652968037, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=27.3037542662116, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790524, Length=306, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787794, Length=314, Percent_Identity=27.7070063694268, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34308; Mature: 34176

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALDLSVAQADDPAQRWLVQLAQRGSLLVFLAILLGFAVSAPNFLSLGNISNVFAQSAT
CCCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
LGILALGLTCVVIGGGSNVVSGGLDLSLAANLGLCAAVYSSLNNAGFDAWQAIGLTLGCG
HHHHHHHHHEEEECCCCCEECCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LLVGAFNGLAVVFLRLPPLLATLASMNLIAGLELVLTQNTVLATDSALLDSLASGVWLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECHHHHHHHHHCCHHHHH
PALAWVLLGVATVLWLLIQHSAFGLRLYAIGEYPQAAEAAGLNLRRYVFASYLIAGGCAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
LAAFCSAAFFSGSTTGSGDMLLSVVAIAFLGVVFSRRLTANIPGTLLATLLLGFLINGFQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
LLNISSFWVNGVQGVLILLVVAFSGAFGRREGEQ
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SALDLSVAQADDPAQRWLVQLAQRGSLLVFLAILLGFAVSAPNFLSLGNISNVFAQSAT
CCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
LGILALGLTCVVIGGGSNVVSGGLDLSLAANLGLCAAVYSSLNNAGFDAWQAIGLTLGCG
HHHHHHHHHEEEECCCCCEECCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LLVGAFNGLAVVFLRLPPLLATLASMNLIAGLELVLTQNTVLATDSALLDSLASGVWLGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECHHHHHHHHHCCHHHHH
PALAWVLLGVATVLWLLIQHSAFGLRLYAIGEYPQAAEAAGLNLRRYVFASYLIAGGCAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHH
LAAFCSAAFFSGSTTGSGDMLLSVVAIAFLGVVFSRRLTANIPGTLLATLLLGFLINGFQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
LLNISSFWVNGVQGVLILLVVAFSGAFGRREGEQ
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]